View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13866_low_16 (Length: 334)
Name: NF13866_low_16
Description: NF13866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13866_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 19 - 321
Target Start/End: Complemental strand, 23087707 - 23087389
Alignment:
| Q |
19 |
aataagcttaatccaaacagggcctaaacatgttccaaaattaactaactgagatcacccaacatgttaagaaaaaccaactaaaaaattagaatctcac |
118 |
Q |
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| T |
23087707 |
aataagctcaacccaaacagggcctaaacatgttccaaaattaactaactgagatcaccccacatgttaagaaaaaccaactaaaaaattagaatctcac |
23087608 |
T |
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| Q |
119 |
tccaacatagttgctgattgaagatca----------------gcataaataaaaatcagaatgagaaaaactgtggctgattgaattgttctatgttat |
202 |
Q |
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| T |
23087607 |
tccaacatagttgctgattgacgatcaacatatataaatatcagcataaataaaaatcagaatgagaaaaactgtggctgattgaattgttatatgttat |
23087508 |
T |
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| Q |
203 |
acttcttcctatactttgatcatactaaataatcttgatctatgaaattaactcatccatcatcttcatagtccatcctcatccaaatcttctgataata |
302 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23087507 |
acttcttcctatactttgatcatactaaataatcttaatctatgaaattaactcatccatcatcttcatagtccatcctcatccaaatcttctgataata |
23087408 |
T |
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| Q |
303 |
aaggcccttcttcttcctc |
321 |
Q |
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| T |
23087407 |
aaggcccttcttcttcctc |
23087389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 266
Target Start/End: Original strand, 19745837 - 19745895
Alignment:
| Q |
208 |
ttcctatactttgatcatactaaataatcttgatctatgaaattaactcatccatcatc |
266 |
Q |
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| T |
19745837 |
ttcctatgctttgatcatattacataatcttaatctaacaaattaactcattcatcatc |
19745895 |
T |
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