View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13866_low_18 (Length: 320)

Name: NF13866_low_18
Description: NF13866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13866_low_18
NF13866_low_18
[»] chr3 (9 HSPs)
chr3 (1-161)||(54624398-54624558)
chr3 (1-160)||(32877614-32877773)
chr3 (155-299)||(17530223-17530369)
chr3 (155-299)||(17535162-17535308)
chr3 (100-171)||(54624322-54624393)
chr3 (100-160)||(32877548-32877608)
chr3 (255-299)||(54624219-54624263)
chr3 (170-271)||(48978381-48978481)
chr3 (170-271)||(48987921-48988021)
[»] chr4 (3 HSPs)
chr4 (1-161)||(23622662-23622822)
chr4 (8-171)||(16490158-16490320)
chr4 (100-171)||(23622586-23622657)
[»] scaffold0247 (1 HSPs)
scaffold0247 (1-171)||(24326-24496)
[»] chr6 (2 HSPs)
chr6 (1-160)||(12414808-12414967)
chr6 (100-171)||(12414729-12414802)
[»] scaffold0021 (2 HSPs)
scaffold0021 (23-160)||(177256-177393)
scaffold0021 (100-171)||(177177-177250)
[»] chr5 (7 HSPs)
chr5 (155-299)||(17554153-17554298)
chr5 (155-299)||(31150997-31151141)
chr5 (223-299)||(1694113-1694189)
chr5 (266-299)||(346423-346456)
chr5 (266-299)||(361071-361104)
chr5 (155-271)||(5600287-5600403)
chr5 (155-271)||(5609933-5610049)
[»] chr2 (3 HSPs)
chr2 (155-299)||(22632082-22632225)
chr2 (170-271)||(1790710-1790810)
chr2 (170-271)||(1800204-1800304)
[»] chr7 (2 HSPs)
chr7 (155-299)||(14775332-14775483)
chr7 (155-299)||(15225785-15225936)
[»] chr1 (1 HSPs)
chr1 (131-171)||(25881733-25881773)
[»] scaffold0281 (1 HSPs)
scaffold0281 (199-299)||(23738-23838)


Alignment Details
Target: chr3 (Bit Score: 161; Significance: 7e-86; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 54624558 - 54624398
Alignment:
Q  1 atctcacttggagatttctcaagtatctcacgtagagatttcaaaataatatctcaaagagatatttcaaataatatcccaacttggagatattataaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54624558 atctcacttggagatttctcaagtatctcacgtagagatttcaaaataatatctcaaagagatatttcaaataatatcccaacttggagatattataaat 54624459  T
Q  101 acaaactttcagggatatcttagcttcaatagaagaaagatatttgaagcttgctttgttt 161  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54624458 acaaactttcagggatatcttagcttcaatagaagaaagatatttgaagcttgctttgttt 54624398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 32877773 - 32877614
Alignment:
Q  1 atctcacttggagatttctcaagtatctcacgtagagatttcaaaataatatctcaaagagatatttcaaataatatcccaacttggagatattataaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||    
T  32877773 atctcacttggagatttctcaagtatctcacgtagagatttcaaaataatatctcaaagagatattttaaataatattccaacttggagatattatcaat 32877674  T
Q  101 acaaactttcagggatatcttagcttcaatagaagaaagatatttgaagcttgctttgtt 160  Q
    |||||||||||| |||||||||||| |||  ||||||||||||||||| |||||||||||    
T  32877673 acaaactttcagtgatatcttagctacaagtgaagaaagatatttgaaacttgctttgtt 32877614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 155 - 299
Target Start/End: Original strand, 17530223 - 17530369
Alignment:
Q  155 tttgtttgtt-gttgaagttgaagagcttgtgaataaatctaatggatattcacgta-gagagagatgtagatttagctttgagagagtatgtattctta 252  Q
    |||||||||| |||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  17530223 tttgtttgtttgttgtagctgaagagcttgtgaataaatctaatggatattcacgtaagagagagatgtagatttagctttgagagagtatgtattctta 17530322  T
Q  253 ttgtaagcttttaagaattaacaagggtgtgtgcttgtatttataga 299  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||    
T  17530323 ttgtaagctcttgagaattaacaagggtgtgtgcttgtatttataga 17530369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 155 - 299
Target Start/End: Original strand, 17535162 - 17535308
Alignment:
Q  155 tttgtttgtt-gttgaagttgaagagcttgtgaataaatctaatggatattcacgta-gagagagatgtagatttagctttgagagagtatgtattctta 252  Q
    |||||||||| |||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  17535162 tttgtttgtttgttgtagctgaagagcttgtgaataaatctaatggatattcacgtaagagagagatgtagatttagctttgagagagtatgtattctta 17535261  T
Q  253 ttgtaagcttttaagaattaacaagggtgtgtgcttgtatttataga 299  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||    
T  17535262 ttgtaagctcttgagaattaacaagggtgtgtgcttgtatttataga 17535308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 100 - 171
Target Start/End: Complemental strand, 54624393 - 54624322
Alignment:
Q  100 tacaaactttcagggatatcttagcttcaatagaagaaagatatttgaagcttgctttgtttgttgttgaag 171  Q
    ||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  54624393 tacaaactttcagagatatcttagctacaagagaagaaagatatttgaagcttgctttgtttgttgttgaag 54624322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 32877608 - 32877548
Alignment:
Q  100 tacaaactttcagggatatcttagcttcaatagaagaaagatatttgaagcttgctttgtt 160  Q
    ||||||||||||| ||||||||||||  || ||||||||||||||||||||||||||||||    
T  32877608 tacaaactttcagagatatcttagctataagagaagaaagatatttgaagcttgctttgtt 32877548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 255 - 299
Target Start/End: Complemental strand, 54624263 - 54624219
Alignment:
Q  255 gtaagcttttaagaattaacaagggtgtgtgcttgtatttataga 299  Q
    ||||||| || ||||||||||||||||||||||||||||||||||    
T  54624263 gtaagctcttgagaattaacaagggtgtgtgcttgtatttataga 54624219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 170 - 271
Target Start/End: Complemental strand, 48978481 - 48978381
Alignment:
Q  170 agttgaagagcttgtgaataaatctaatggatattcacgtagagagagatgtagatttagctttgagagagtatg-tattctt-attgtaagcttttaag 267  Q
    ||||||||||||||||||| | ||| || ||||||||||| ||||||||| | ||||| |||||||||||||||| || ||||  ||||||||| |||||    
T  48978481 agttgaagagcttgtgaat-attctgattgatattcacgt-gagagagat-ttgattttgctttgagagagtatgataatcttgtttgtaagctcttaag 48978385  T
Q  268 aatt 271  Q
    ||||    
T  48978384 aatt 48978381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 170 - 271
Target Start/End: Complemental strand, 48988021 - 48987921
Alignment:
Q  170 agttgaagagcttgtgaataaatctaatggatattcacgtagagagagatgtagatttagctttgagagagtatg-tattctt-attgtaagcttttaag 267  Q
    ||||||||||||||||||| | ||| || ||||||||||| ||||||||| | ||||| |||||||||||||||| || ||||  ||||||||| |||||    
T  48988021 agttgaagagcttgtgaat-attctgattgatattcacgt-gagagagat-ttgattttgctttgagagagtatgataatcttgtttgtaagctcttaag 48987925  T
Q  268 aatt 271  Q
    ||||    
T  48987924 aatt 48987921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 157; Significance: 2e-83; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 23622822 - 23622662
Alignment:
Q  1 atctcacttggagatttctcaagtatctcacgtagagatttcaaaataatatctcaaagagatatttcaaataatatcccaacttggagatattataaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23622822 atctcacttggagatttctcaagtatctcacgtagagatttcaaaataatatctcaaagagatatttcaaataatatcccaacttggagatattataaat 23622723  T
Q  101 acaaactttcagggatatcttagcttcaatagaagaaagatatttgaagcttgctttgttt 161  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  23622722 acaaactttcagggatatcttagcttcaataaaagaaagatatttgaagcttgctttgttt 23622662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 8 - 171
Target Start/End: Original strand, 16490158 - 16490320
Alignment:
Q  8 ttggagatttctcaagtatctcacgtagagatttcaaaataatatctcaaagagatatttcaaataatatccc-aacttggagatattataaatacaaac 106  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||| ||| |||||||| |||||||||||| |||||||||||||||||  || ||||    
T  16490158 ttggagatttctaaagtatctcacgtagagatttcaaa-taatatcttaaatagatattttaaataatatccctaacttggagatattatatttataaac 16490256  T
Q  107 tttcagggatatcttagcttcaatagaagaaagatatttgaagcttgctttgtttgttgttgaag 171  Q
    |||||  ||||||||||||  || |||||||||||||||||||||||||||| ||||||||||||    
T  16490257 tttcaaagatatcttagctataagagaagaaagatatttgaagcttgctttg-ttgttgttgaag 16490320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 100 - 171
Target Start/End: Complemental strand, 23622657 - 23622586
Alignment:
Q  100 tacaaactttcagggatatcttagcttcaatagaagaaagatatttgaagcttgctttgtttgttgttgaag 171  Q
    ||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  23622657 tacaaactttcagagatatcttagctacaagagaagaaagatatttgaagcttgctttgtttgttgttgaag 23622586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 24496 - 24326
Alignment:
Q  1 atctcacttggagatttctcaagtatctcacgtagagatttcaaaataatatctcaaagagatatttcaaataatatcccaacttggagatattataaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  24496 atctcacttggagatttctcaagtatctcacgtagagatttcaaaataatatctcaaagagatatttcaaataatatcccaacttggagatattatatat 24397  T
Q  101 acaaactttcagggatatcttagcttcaatagaagaaagatatttgaagcttgctttgtttgttgttgaag 171  Q
    ||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||    
T  24396 acaaactttcagggatatcttagctacatgagaagaaagatatttgaagcttgctttgtttgttgttgaag 24326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 136; Significance: 6e-71; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 12414967 - 12414808
Alignment:
Q  1 atctcacttggagatttctcaagtatctcacgtagagatttcaaaataatatctcaaagagatatttcaaataatatcccaacttggagatattataaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  12414967 atctcacttggagatttctcaagtatctcacgtagagatttcaaattaatatctcaaagagatatttcaaataatatcccaacttggagatattttcaat 12414868  T
Q  101 acaaactttcagggatatcttagcttcaatagaagaaagatatttgaagcttgctttgtt 160  Q
    | |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  12414867 ataaactttcagagatatcttagcttcaagagaagaaagatatttgaagcttgctttgtt 12414808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 100 - 171
Target Start/End: Complemental strand, 12414802 - 12414729
Alignment:
Q  100 tacaaactttcagggatatcttagcttcaatagaagaaagatatttgaagcttgctttgt--ttgttgttgaag 171  Q
    ||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||  ||||||||||||    
T  12414802 tacaaactttcagagatatcttagctacaagagaagaaagatatttgaagcttgctttgttgttgttgttgaag 12414729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 23 - 160
Target Start/End: Complemental strand, 177393 - 177256
Alignment:
Q  23 gtatctcacgtagagatttcaaaataatatctcaaagagatatttcaaataatatcccaacttggagatattataaatacaaactttcagggatatctta 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||    
T  177393 gtatctcacgtagagatttcaaaataatatctcaaagagatatttcaaataatatcccaacttggagatattttcaatacaaactttcagagatatctta 177294  T
Q  123 gcttcaatagaagaaagatatttgaagcttgctttgtt 160  Q
     |||||| ||||||||||||||||||||||||||||||    
T  177293 acttcaagagaagaaagatatttgaagcttgctttgtt 177256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 171
Target Start/End: Complemental strand, 177250 - 177177
Alignment:
Q  100 tacaaactttcagggatatcttagcttcaatagaagaaagatatttgaagcttgctttgt--ttgttgttgaag 171  Q
    ||||||||||||| |||||||||||| ||| ||||||||||||||| |||||||||| ||  ||||||||||||    
T  177250 tacaaactttcagagatatcttagctacaagagaagaaagatatttaaagcttgcttagttgttgttgttgaag 177177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 9e-30; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 155 - 299
Target Start/End: Original strand, 17554153 - 17554298
Alignment:
Q  155 tttgtttgttgttgaagttgaagagcttgtgaataaatctaatggatattcacgt-agagagagatgtagatttagctttgagagagtatg-tattctta 252  Q
    |||||||||||||| ||||||||||||| ||||||  | | || ||||||||||| |||||||||| | ||| | |||||||||||||||| || ||||     
T  17554153 tttgtttgttgttgtagttgaagagcttttgaatattttttattgatattcacgtgagagagagattt-gatattgctttgagagagtatgataatcttg 17554251  T
Q  253 ttgtaagcttttaagaattaacaagggtgtgtgcttgtatttataga 299  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||    
T  17554252 ttgtaagctcttgagaattaacaagggtgtgtgcttgtatttataga 17554298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 155 - 299
Target Start/End: Original strand, 31150997 - 31151141
Alignment:
Q  155 tttgtttgtt-gttgaagttgaagagcttgtgaataaatctaatggatattcacgtagagagagatgtagatttagctttgagagagtatg-tattctta 252  Q
    |||||||||| |||| ||||||||||||||||||||  | | || ||||||||||| ||||||||| | ||||| |||||||||||||||| || ||||     
T  31150997 tttgtttgtttgttgtagttgaagagcttgtgaatattt-tgattgatattcacgt-gagagagattt-gattttgctttgagagagtatgataatcttg 31151093  T
Q  253 tt-gtaagcttttaagaattaacaagggtgtgtgcttgtatttataga 299  Q
    || ||||||| || ||||||||||||||||||||||||||||||||||    
T  31151094 tttgtaagctcttgagaattaacaagggtgtgtgcttgtatttataga 31151141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 223 - 299
Target Start/End: Original strand, 1694113 - 1694189
Alignment:
Q  223 gatttagctttgagagagtatgtattcttattgtaagcttttaagaattaacaagggtgtgtgcttgtatttataga 299  Q
    ||||| |||||||||||||||||| |||| ||||||||| || ||||||||||||||||| || |||||||||||||    
T  1694113 gattttgctttgagagagtatgtaatcttgttgtaagctcttgagaattaacaagggtgtatgtttgtatttataga 1694189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 299
Target Start/End: Original strand, 346423 - 346456
Alignment:
Q  266 agaattaacaagggtgtgtgcttgtatttataga 299  Q
    ||||||||||||||||||||||||||||||||||    
T  346423 agaattaacaagggtgtgtgcttgtatttataga 346456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 299
Target Start/End: Original strand, 361071 - 361104
Alignment:
Q  266 agaattaacaagggtgtgtgcttgtatttataga 299  Q
    ||||||||||||||||||||||||||||||||||    
T  361071 agaattaacaagggtgtgtgcttgtatttataga 361104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 271
Target Start/End: Complemental strand, 5600403 - 5600287
Alignment:
Q  155 tttgtttgtt-gttgaagttgaagagcttgtgaataaatctaatggatattcacgtagagagagatgtagatttagctttgagagagtatg-tattctt- 251  Q
    |||||||||| |||| ||||||||||||||||||| | | | || ||||||||||| ||||||||| | ||||| |||||||||||||||| || ||||     
T  5600403 tttgtttgtttgttgtagttgaagagcttgtgaat-attttgattgatattcacgt-gagagagat-ttgattttgctttgagagagtatgataatcttg 5600307  T
Q  252 attgtaagcttttaagaatt 271  Q
     ||||||||| |||||||||    
T  5600306 tttgtaagctcttaagaatt 5600287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 271
Target Start/End: Complemental strand, 5610049 - 5609933
Alignment:
Q  155 tttgtttgtt-gttgaagttgaagagcttgtgaataaatctaatggatattcacgtagagagagatgtagatttagctttgagagagtatg-tattctt- 251  Q
    |||||||||| |||| ||||||||||||||||||| | | | || ||||||||||| ||||||||| | ||||| |||||||||||||||| || ||||     
T  5610049 tttgtttgtttgttgtagttgaagagcttgtgaat-attttgattgatattcacgt-gagagagat-ttgattttgctttgagagagtatgataatcttg 5609953  T
Q  252 attgtaagcttttaagaatt 271  Q
     ||||||||| |||||||||    
T  5609952 tttgtaagctcttaagaatt 5609933  T

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Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 155 - 299
Target Start/End: Complemental strand, 22632225 - 22632082
Alignment:
Q  155 tttgtttgttgttgaagttgaagagcttgtgaataaatctaatggatattcacgtagagagagatgtagatttagctttgagagagtatg-tattcttat 253  Q
    |||||||||||||| |||| |||||||| ||||||  ||| || ||||||||||| ||||||||| | ||||| |||||||||||||||| || |||| |    
T  22632225 tttgtttgttgttgtagttaaagagcttttgaatat-tctgattgatattcacgt-gagagagattt-gattttgctttgagagagtatgataatcttgt 22632129  T
Q  254 t-gtaagcttttaagaattaacaagggtgtgtgcttgtatttataga 299  Q
    | ||||||| || ||||||||||||||||||||||||||||||||||    
T  22632128 ttgtaagctcttgagaattaacaagggtgtgtgcttgtatttataga 22632082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 170 - 271
Target Start/End: Complemental strand, 1790810 - 1790710
Alignment:
Q  170 agttgaagagcttgtgaataaatctaatggatattcacgtagagagagatgtagatttagctttgagagagtatg-tattctt-attgtaagcttttaag 267  Q
    ||||||||||||||||||| | ||| || ||||||||||| ||||||||| | ||||| |||||||||||||||| || ||||  ||||||||| |||||    
T  1790810 agttgaagagcttgtgaat-attctgattgatattcacgt-gagagagat-ttgattttgctttgagagagtatgataatcttgtttgtaagctcttaag 1790714  T
Q  268 aatt 271  Q
    ||||    
T  1790713 aatt 1790710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 170 - 271
Target Start/End: Complemental strand, 1800304 - 1800204
Alignment:
Q  170 agttgaagagcttgtgaataaatctaatggatattcacgtagagagagatgtagatttagctttgagagagtatg-tattctt-attgtaagcttttaag 267  Q
    ||||||||||||||||||| | ||| || ||||||||||| ||||||||| | ||||| |||||||||||||||| || ||||  ||||||||| |||||    
T  1800304 agttgaagagcttgtgaat-attctgattgatattcacgt-gagagagat-ttgattttgctttgagagagtatgataatcttgtttgtaagctcttaag 1800208  T
Q  268 aatt 271  Q
    ||||    
T  1800207 aatt 1800204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 155 - 299
Target Start/End: Complemental strand, 14775483 - 14775332
Alignment:
Q  155 tttgtttgttgttgaagttgaagagcttgtgaataaatctaatggatattcacgt-agagagagatgtagattta-----gctttgagagagtatg-tat 247  Q
    |||||||||||||| ||||||||||||| ||||||  | | || ||||||||||| |||||||||   ||||||      |||||||||||||||| ||     
T  14775483 tttgtttgttgttgtagttgaagagcttttgaatatttttgattgatattcacgtgagagagagagagagatttgatattgctttgagagagtatgataa 14775384  T
Q  248 tcttattgtaagcttttaagaattaacaagggtgtgtgcttgtatttataga 299  Q
    |||| |||||||||  | ||||||||||||||||||||||||||||||||||    
T  14775383 tcttgttgtaagctcgtgagaattaacaagggtgtgtgcttgtatttataga 14775332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 155 - 299
Target Start/End: Complemental strand, 15225936 - 15225785
Alignment:
Q  155 tttgtttgttgttgaagttgaagagcttgtgaataaatctaatggatattcacgt-agagagagatgtagattta-----gctttgagagagtatg-tat 247  Q
    |||||||||||||| ||||||||||||| ||||||  | | || ||||||||||| |||||||||   ||||||      |||||||||||||||| ||     
T  15225936 tttgtttgttgttgtagttgaagagcttttgaatatttttgattgatattcacgtgagagagagagagagatttgatattgctttgagagagtatgataa 15225837  T
Q  248 tcttattgtaagcttttaagaattaacaagggtgtgtgcttgtatttataga 299  Q
    |||| |||||||||  | ||||||||||||||||||||||||||||||||||    
T  15225836 tcttgttgtaagctcgtgagaattaacaagggtgtgtgcttgtatttataga 15225785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 25881773 - 25881733
Alignment:
Q  131 agaagaaagatatttgaagcttgctttgtttgttgttgaag 171  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  25881773 agaagaaagatatttgaagcttgctttgtttgttgttgaag 25881733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 199 - 299
Target Start/End: Complemental strand, 23838 - 23738
Alignment:
Q  199 gatattcacgtagagagagatgtagatttagctttgagagagtatg-tattcttatt-gtaagcttttaagaattaacaagggtgtgtgcttgtatttat 296  Q
    ||||||||||| ||||||||| |  |||| |||||||||||||||| || |||| || ||||||| || ||||||||||||| |||||||||||||||||    
T  23838 gatattcacgt-gagagagatttt-attttgctttgagagagtatgataatcttgtttgtaagctcttgagaattaacaaggatgtgtgcttgtatttat 23741  T
Q  297 aga 299  Q
    |||    
T  23740 aga 23738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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