View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13866_low_19 (Length: 315)
Name: NF13866_low_19
Description: NF13866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13866_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 15 - 308
Target Start/End: Complemental strand, 14871072 - 14870779
Alignment:
| Q |
15 |
gaataaaactgtggttggcaaccttactcaaaatatggatttcgcccatctgcaacttttgtcagctcaacttgctcttgatcagttgggtttcagtttg |
114 |
Q |
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| T |
14871072 |
gaataatactgtggttggcaactttactcaaaatgtggatttcgcccatcagcgactatcgtcatctcaacttgctcttgatcaattgggtttcagtttg |
14870973 |
T |
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| Q |
115 |
gatagatcccaggaagagctcactttcttaaccaattatagttaggctctacatgtgcttaatgatttttggaaggataaagctaaaaatgccaagttca |
214 |
Q |
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| T |
14870972 |
gatagatcccagtaagagctcacttgcttaaccaattatagtcaggctctccatgtgcttaatgattcttggaaggatagagctaaaaatgtcatgttca |
14870873 |
T |
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| Q |
215 |
ttgatggtgacagaaacacttcctactttcatagaagtgtgaaaataagagaggcccaaagttacattagtctcctaaaaaataatgatgatgt |
308 |
Q |
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| T |
14870872 |
ttgatggtgacagaaacactttctactttcatagaagtgtgaaaataagagagatcaaaagttacattagtctcttaaaaaataatcatgatgt |
14870779 |
T |
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Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 94 - 274
Target Start/End: Original strand, 17226638 - 17226818
Alignment:
| Q |
94 |
gatcagttgggtttcagtttggatagatcccaggaagagctcactttcttaaccaattatagttaggctctacatgtgcttaatgatttttggaaggata |
193 |
Q |
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||||| |||||||||||| |||||||||| ||||| || ||||| | |||||| ||||| ||| | || || || | || || ||||| |||||||||| |
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| T |
17226638 |
gatcaattgggtttcagtatggatagatctcaggatgaactcacatgcttaactaattacagtcaagcccttcacatcctaaacgatttctggaaggata |
17226737 |
T |
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| Q |
194 |
aagctaaaaatgccaagttcattgatggtgacagaaacacttcctactttcatagaagtgtgaaaataagagaggcccaaa |
274 |
Q |
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| T |
17226738 |
aagccaagaatgccaaattcattgatggagacagaaacactgcttactttcatagaagtgtgaaaattagagaggcacaaa |
17226818 |
T |
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