View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13866_low_20 (Length: 313)
Name: NF13866_low_20
Description: NF13866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13866_low_20 |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 11788582 - 11788275
Alignment:
| Q |
1 |
cttttatatcttatatataccgtacattgctttgagatgcttcgagatggcaaccacaataatcaacaatgagaattaagttcaatgctagaattgatta |
100 |
Q |
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|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
11788582 |
cttttatatcttatatataccgtaaattgcttcgagatgcttcgagatggcaaccacaataatcaacaatgagaattaagttcaatgctcgaattgatta |
11788483 |
T |
|
| Q |
101 |
ctacagtgtaaccgttactataatatgttccatagaatgcatttcataaaactccaaagacgaattcaacatgagtcctataattaagtatttcatcata |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11788482 |
ctacagtgtaaccgttactataatatgtttcatagaatgcatttcataaaactccaaagacgaattcaacatgagtcctataattaagtatttcatcata |
11788383 |
T |
|
| Q |
201 |
tttgctgctttaagaatcacttgctagatatagaattgaaaaacaaacagaaattagcattgttattcttacttgaattgttctgaactttgatggcggc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
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| T |
11788382 |
tttgctgctttaagaatcacttgctagatatagaattgaaaaacaaacagaaattagcattgttattcttacttgacttgttcagaactttgatggcggc |
11788283 |
T |
|
| Q |
301 |
gaagtagt |
308 |
Q |
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|||||||| |
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| T |
11788282 |
gaagtagt |
11788275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 11800749 - 11800442
Alignment:
| Q |
1 |
cttttatatcttatatataccgtacattgctttgagatgcttcgagatggcaaccacaataatcaacaatgagaattaagttcaatgctagaattgatta |
100 |
Q |
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|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
11800749 |
cttttatatcttatatataccgtaaattgcttcgagatgcttcgagatggcaaccacaataatcaacaatgagaattaagttcaatgctcgaattgatta |
11800650 |
T |
|
| Q |
101 |
ctacagtgtaaccgttactataatatgttccatagaatgcatttcataaaactccaaagacgaattcaacatgagtcctataattaagtatttcatcata |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11800649 |
ctacagtgtaaccgttactataatatgtttcatagaatgcatttcataaaactccaaagacgaattcaacatgagtcctataattaagtatttcatcata |
11800550 |
T |
|
| Q |
201 |
tttgctgctttaagaatcacttgctagatatagaattgaaaaacaaacagaaattagcattgttattcttacttgaattgttctgaactttgatggcggc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
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| T |
11800549 |
tttgctgctttaagaatcacttgctagatatagaattgaaaaacaaacagaaattagcattgttattcttacttgacttgttcagaactttgatggcggc |
11800450 |
T |
|
| Q |
301 |
gaagtagt |
308 |
Q |
| |
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|||||||| |
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| T |
11800449 |
gaagtagt |
11800442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 40 - 308
Target Start/End: Complemental strand, 11784709 - 11784444
Alignment:
| Q |
40 |
cttcgagatggcaaccacaataatcaacaatgagaattaagttcaatgctagaattgattactacagtgtaaccgttactataatatgttccatagaatg |
139 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||| ||||||||| |
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| T |
11784709 |
cttcgagatggcacccacaataatcaacaatgagaattaagttcaatgctagaattgattgttatagcgtaaccgttactataatatgtttcatagaatg |
11784610 |
T |
|
| Q |
140 |
catttcataaaactccaaagacgaattcaacatgagtcctataattaagtatttcatcatatttgctgctttaagaatcacttgctagatatagaattga |
239 |
Q |
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||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||| ||| ||||| |
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| T |
11784609 |
cattttgtaaaaccacaaagacgaattcaacatgagtcctataat---gtatttcatcatatttgctgctttaagaataacttactagacataatattga |
11784513 |
T |
|
| Q |
240 |
aaaacaaacagaaattagcattgttattcttacttgaattgttctgaactttgatggcggcgaagtagt |
308 |
Q |
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|||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
11784512 |
aaaacaaacaaaaattagtattgttattcttacttgaattgttcagaactttgatggcggcgacgtagt |
11784444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 188 - 308
Target Start/End: Complemental strand, 11698376 - 11698257
Alignment:
| Q |
188 |
gtatttcatcatatttgctgctttaagaatcacttgctagatatagaattgaaaaacaaacagaaattagcattgttattcttacttgaattgttctgaa |
287 |
Q |
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||||||||| |||||| ||||||||||||| |||||||||| ||| | ||||||||||| ||||||||| ||||||||||||||||||||||||| ||| |
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| T |
11698376 |
gtatttcattatattttctgctttaagaataacttgctagacatata-ttgaaaaacaagcagaaattaacattgttattcttacttgaattgtttagaa |
11698278 |
T |
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| Q |
288 |
ctttgatggcggcgaagtagt |
308 |
Q |
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|||||| | | |||||||||| |
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| T |
11698277 |
ctttgacgactgcgaagtagt |
11698257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 235 - 298
Target Start/End: Complemental strand, 11708035 - 11707972
Alignment:
| Q |
235 |
attgaaaaacaaacagaaattagcattgttattcttacttgaattgttctgaactttgatggcg |
298 |
Q |
| |
|
|||||||||||| | || |||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
11708035 |
attgaaaaacaagaataagttagcattgttattcttacttgaattgttcagaactttgacggcg |
11707972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 251 - 293
Target Start/End: Complemental strand, 11676796 - 11676754
Alignment:
| Q |
251 |
aaattagcattgttattcttacttgaattgttctgaactttga |
293 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11676796 |
aaattagcattgttattcttacttgaattgttcagaactttga |
11676754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 251 - 293
Target Start/End: Complemental strand, 11685075 - 11685033
Alignment:
| Q |
251 |
aaattagcattgttattcttacttgaattgttctgaactttga |
293 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11685075 |
aaattagcattgttattcttacttgaattgttcagaactttga |
11685033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 283
Target Start/End: Complemental strand, 20088 - 20045
Alignment:
| Q |
240 |
aaaacaaacagaaattagcattgttattcttacttgaattgttc |
283 |
Q |
| |
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||||||| ||||||| |||||| ||||||||||||||||||||| |
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| T |
20088 |
aaaacaagcagaaatcagcatttttattcttacttgaattgttc |
20045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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