View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13866_low_21 (Length: 308)

Name: NF13866_low_21
Description: NF13866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13866_low_21
NF13866_low_21
[»] chr2 (15 HSPs)
chr2 (185-308)||(28222500-28222623)
chr2 (185-308)||(32311042-32311165)
chr2 (213-308)||(32813370-32813465)
chr2 (6-157)||(32311206-32311355)
chr2 (185-308)||(28213653-28213774)
chr2 (224-308)||(32792578-32792662)
chr2 (5-151)||(28213411-28213562)
chr2 (227-308)||(32563727-32563808)
chr2 (5-157)||(32790079-32790221)
chr2 (74-151)||(32812278-32812353)
chr2 (186-259)||(32790301-32790374)
chr2 (225-275)||(28148180-28148230)
chr2 (240-308)||(28179346-28179414)
chr2 (273-308)||(32799246-32799281)
chr2 (269-308)||(32785109-32785149)


Alignment Details
Target: chr2 (Bit Score: 96; Significance: 4e-47; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 185 - 308
Target Start/End: Complemental strand, 28222623 - 28222500
Alignment:
Q  185 gaaccatcacagaagcaattgtgacttgaaatatcaaaactaagaatgatttcttgatctataattgtaagagttgaatagggagcttatacaaaaatat 284  Q
    |||||||||||||||||  ||||||||| | ||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28222623 gaaccatcacagaagcagctgtgacttgtattatcatatctaagaatgattccttgatctataattgtaagagttgaatagggagcttatacaaaaatat 28222524  T
Q  285 acttcaataccttggaatccaagt 308  Q
    ||||||||||||||||||||||||    
T  28222523 acttcaataccttggaatccaagt 28222500  T

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Target: chr2; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 185 - 308
Target Start/End: Complemental strand, 32311165 - 32311042
Alignment:
Q  185 gaaccatcacagaagcaattgtgacttgaaatatcaaaactaagaatgatttcttgatctataattgtaagagttgaatagggagcttatacaaaaatat 284  Q
    ||||||||||||||||| |||||||||| ||||||| | |||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  32311165 gaaccatcacagaagcagttgtgacttgcaatatcatatctaagaatcatttattgatctctaattgtaagagttgaatagggagcttatacaaaaatat 32311066  T
Q  285 acttcaataccttggaatccaagt 308  Q
    ||||||||||||||||||||||||    
T  32311065 acttcaataccttggaatccaagt 32311042  T

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Target: chr2; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 213 - 308
Target Start/End: Original strand, 32813370 - 32813465
Alignment:
Q  213 aaatatcaaaactaagaatgatttcttgatctataattgtaagagttgaatagggagcttatacaaaaatatacttcaataccttggaatccaagt 308  Q
    |||||||| | |||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32813370 aaatatcatatctaagaatcatttattgatctctaattgtaagagttgaatagggagcttatacaaaaatatacttcaataccttggaatccaagt 32813465  T

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Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 6 - 157
Target Start/End: Complemental strand, 32311355 - 32311206
Alignment:
Q  6 acctatagccaattattaatttaggtgctaaataatatccaatctttctattatattgatcacttaattcaagttttcatatttccatatgtataattta 105  Q
    ||||||||||||||||||||||||||||||||| ||||||  | ||| |||||||||||| ||||   |||||||||| ||||| ||||  |||| ||||    
T  32311355 acctatagccaattattaatttaggtgctaaattatatccgttatttttattatattgattacttgtgtcaagttttcttattttcata--tatagttta 32311258  T
Q  106 aacttaaatctacatttgacattaatttcgacgtgaaagttgattctttata 157  Q
    || | ||| ||||||||||||||||||||||| ||||||||||||| |||||    
T  32311257 aattaaaacctacatttgacattaatttcgacatgaaagttgattccttata 32311206  T

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Target: chr2; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 185 - 308
Target Start/End: Original strand, 28213653 - 28213774
Alignment:
Q  185 gaaccatcacagaagcaattgtgacttgaaatatcaaaactaagaatgatttcttgatctataattgtaagagttgaatagggagcttatacaaaaatat 284  Q
    ||||||||||||||||| |||||||||| ||||||| | |  ||||| ||| |  ||||| ||||||||||||||||||||||||||||  |||||||||    
T  28213653 gaaccatcacagaagcagttgtgacttgcaatatcatatcatagaattattccaagatctctaattgtaagagttgaatagggagctta--caaaaatat 28213750  T
Q  285 acttcaataccttggaatccaagt 308  Q
    ||||||||||||||||||||||||    
T  28213751 acttcaataccttggaatccaagt 28213774  T

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Target: chr2; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 224 - 308
Target Start/End: Original strand, 32792578 - 32792662
Alignment:
Q  224 ctaagaatgatttcttgatctataattgtaagagttgaatagggagcttatacaaaaatatacttcaataccttggaatccaagt 308  Q
    |||||||| |||| ||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  32792578 ctaagaatcatttattgatctctaattgtaagagttcaatacggagcttatacaaaaatatacttcaataccttggaatccaagt 32792662  T

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Target: chr2; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 151
Target Start/End: Original strand, 28213411 - 28213562
Alignment:
Q  5 aacctatagccaattattaatttaggtgctaaataatatccaatctttctattatattgatcactt-----aa--ttcaagttttcatatttccatatgt 97  Q
    |||||| |||||||||||| |||||||||||||| ||||||| |||||||||||||||||| ||||     ||   |||||||||| ||||| |  || |    
T  28213411 aacctacagccaattattagtttaggtgctaaattatatccattctttctattatattgattacttgcgtcaactgtcaagttttcttattttc--attt 28213508  T
Q  98 ataatttaaacttaaatctacatttgacattaatttcgacgtgaaagttgattc 151  Q
    ||| |||||| || |||||||||||||||||||||| |||||||||||||||||    
T  28213509 atagtttaaatttgaatctacatttgacattaattttgacgtgaaagttgattc 28213562  T

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Target: chr2; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 227 - 308
Target Start/End: Original strand, 32563727 - 32563808
Alignment:
Q  227 agaatgatttcttgatctataattgtaagagttgaatagggagcttatacaaaaatatacttcaataccttggaatccaagt 308  Q
    ||||| |||| ||||| | |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  32563727 agaatcatttattgatatctaattgtaagagctgaatagggagcttataaaaaaatatacttcaataccttggaatccaagt 32563808  T

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Target: chr2; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 5 - 157
Target Start/End: Original strand, 32790079 - 32790221
Alignment:
Q  5 aacctatagccaattattaatttaggtgctaaataatatccaatctttctattatattgatcacttaattcaagttttcatatttccatatgtataattt 104  Q
    |||||||||||||||||||||||||||||||||| ||||||| | ||| ||||         ||||   |||||||||| ||||| |||||  ||| |||    
T  32790079 aacctatagccaattattaatttaggtgctaaattatatccattatttttattt--------acttgtgtcaagttttcttattttcatat--atagttt 32790168  T
Q  105 aaacttaaatctacatttgacattaatttcgacgtgaaagttgattctttata 157  Q
    ||| ||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  32790169 aaatttaaacctacatttgacattaatttcgacgtgaaagttgattccttata 32790221  T

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Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 151
Target Start/End: Original strand, 32812278 - 32812353
Alignment:
Q  74 tcaagttttcatatttccatatgtataatttaaacttaaatctacatttgacattaatttcgacgtgaaagttgattc 151  Q
    |||||||||| ||||| |||||  |||||||||| |||||||||||||||| ||||||||| | ||||||||||||||    
T  32812278 tcaagttttcttattttcatat--ataatttaaatttaaatctacatttgatattaatttcaaggtgaaagttgattc 32812353  T

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Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 186 - 259
Target Start/End: Original strand, 32790301 - 32790374
Alignment:
Q  186 aaccatcacagaagcaattgtgacttgaaatatcaaaactaagaatgatttcttgatctataattgtaagagtt 259  Q
    |||||||||||||||| |||||||||| ||||||| | |||||||| |||| || |||| ||||||||||||||    
T  32790301 aaccatcacagaagcagttgtgacttgcaatatcatatctaagaatcatttattaatctctaattgtaagagtt 32790374  T

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Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 275
Target Start/End: Complemental strand, 28148230 - 28148180
Alignment:
Q  225 taagaatgatttcttgatctataattgtaagagttgaatagggagcttata 275  Q
    ||||||| ||||  |||||| ||||||||||||||||||||||||||||||    
T  28148230 taagaatcatttactgatctgtaattgtaagagttgaatagggagcttata 28148180  T

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Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 308
Target Start/End: Complemental strand, 28179414 - 28179346
Alignment:
Q  240 gatctataattgtaagagttgaatagggagcttatacaaaaatatacttcaataccttggaatccaagt 308  Q
    ||||| |||||||||||||||||||||||||| |||  |||||| ||||  |||||||  |||||||||    
T  28179414 gatctgtaattgtaagagttgaatagggagctgataagaaaatacactttgataccttcaaatccaagt 28179346  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 273 - 308
Target Start/End: Original strand, 32799246 - 32799281
Alignment:
Q  273 atacaaaaatatacttcaataccttggaatccaagt 308  Q
    ||||||||||||||||||||||||||||||| ||||    
T  32799246 atacaaaaatatacttcaataccttggaatctaagt 32799281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 269 - 308
Target Start/End: Original strand, 32785109 - 32785149
Alignment:
Q  269 gcttatacaaaa-atatacttcaataccttggaatccaagt 308  Q
    |||||| ||||| ||||||||||||||||||||||||||||    
T  32785109 gcttattcaaaagatatacttcaataccttggaatccaagt 32785149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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