View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13866_low_23 (Length: 285)
Name: NF13866_low_23
Description: NF13866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13866_low_23 |
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| [»] chr4 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 285
Target Start/End: Original strand, 499438 - 499705
Alignment:
| Q |
18 |
ggaaagactaacaaaagagtttcagattcgttccccaaaagccgaacgtatggtaatttttaatgggaatacagattcactgactttgaatattggtcct |
117 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
499438 |
ggaaagactaacaaaagagtttcagattcgttccgcaaaagccgaacgtatggtaatttttaatgggaatacagattcactgactttgaatattggtcct |
499537 |
T |
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| Q |
118 |
agaaatgacaatgacgctattcctgaagtggacctaaatcacgaattttttctagtaaattttttacgcgaaccagattttgatcgagatataattaagg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
499538 |
agaaatgacaatgacgctattcctgaagtggacctaaatcacgaattttttctagtaaattttttacgcgaaccagattttgatcgagatataattaagg |
499637 |
T |
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| Q |
218 |
gatctatgcgccctctaaggcgtaaaatagcgacaacgaaactttctcaaggaaatggacagccccat |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
499638 |
gatctatgcgccctctaaggcgtaaaatagcgacaacgaaactttctcaaggaaatgcacagccccat |
499705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 285
Target Start/End: Original strand, 6924186 - 6924453
Alignment:
| Q |
18 |
ggaaagactaacaaaagagtttcagattcgttccccaaaagccgaacgtatggtaatttttaatgggaatacagattcactgactttgaatattggtcct |
117 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6924186 |
ggaaagactaacaaaagagtttcagattcgttccgcaaaagccgaacgtatggtaatttttaatgggaatacagattcactgactttgaatattggtcct |
6924285 |
T |
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| Q |
118 |
agaaatgacaatgacgctattcctgaagtggacctaaatcacgaattttttctagtaaattttttacgcgaaccagattttgatcgagatataattaagg |
217 |
Q |
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|||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6924286 |
agaaatgacaatgacgctattcttgaagtggacttaaatcacgaattttttctagtaaattttttacgcgaaccagattttgatcgagatataattaagg |
6924385 |
T |
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| Q |
218 |
gatctatgcgccctctaaggcgtaaaatagcgacaacgaaactttctcaaggaaatggacagccccat |
285 |
Q |
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| T |
6924386 |
gatctatgcgccctctaaggcgtaaaatagcgacaacgaaactttctcaaggaaatgcacagccccat |
6924453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 123
Target Start/End: Original strand, 27529098 - 27529201
Alignment:
| Q |
20 |
aaagactaacaaaagagtttcagattcgttccccaaaagccgaacgtatggtaatttttaatgggaatacagattcactgactttgaatattggtcctag |
119 |
Q |
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||||| ||| ||||||| ||||||||||||||||| || ||||||| ||||||||||||||||||||| |||||| | ||||||| ||| ||||| |
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| T |
27529098 |
aaagaataataaaagaggctcagattcgttccccaattaccaaacgtatagtaatttttaatgggaatacaagttcactaaatttgaatcttgatcctaa |
27529197 |
T |
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| Q |
120 |
aaat |
123 |
Q |
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|||| |
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| T |
27529198 |
aaat |
27529201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 20 - 285
Target Start/End: Original strand, 30831612 - 30831877
Alignment:
| Q |
20 |
aaagactaacaaaagagtttcagattcgttccccaaaagccgaacgtatggtaatttttaatgggaatacagattcactgactttgaatattggtcctag |
119 |
Q |
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||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
30831612 |
aaagactaacaaaagagactcagattcgttccccagaagccgaacgtatggtaatatttaataggaatacagattcactgactttgaatcttggtcctag |
30831711 |
T |
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| Q |
120 |
aaatgacaatgacgctattcctgaagtggacctaaatcacgaattttttctagtaaattttttacgcgaaccagattttgatcgagatataattaaggga |
219 |
Q |
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|||||||||||| |||||||||||| ||||||| |||||||||||||||||| ||||||||||||| ||| |||||| ||| |||||||||||||||||| |
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| T |
30831712 |
aaatgacaatgatgctattcctgaactggacctgaatcacgaattttttctactaaattttttacgtgaatcagattatgaccgagatataattaaggga |
30831811 |
T |
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| Q |
220 |
tctatgcgccctctaaggcgtaaaatagcgacaacgaaactttctcaaggaaatggacagccccat |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||| |
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| T |
30831812 |
tctatgcgccctctaaggcgtaaaatagcgacaacgaaacttgttcaaggaactggacaggcccat |
30831877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 81 - 211
Target Start/End: Complemental strand, 47460500 - 47460370
Alignment:
| Q |
81 |
tgggaatacagattcactgactttgaatattggtcctagaaatgacaatgacgctattcctgaagtggacctaaatcacgaattttttctagtaaatttt |
180 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47460500 |
tgggaatacagagtcactgactttgaatattggtcctagaaatgacaatgacgctattcctgaagtggacctaaatcacgaattttttctagtaaatttt |
47460401 |
T |
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| Q |
181 |
ttacgcgaaccagattttgatcgagatataa |
211 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
47460400 |
ttacgcgaaccagattttgatcgagatataa |
47460370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 28384248 - 28384101
Alignment:
| Q |
18 |
ggaaagactaacaaaagagtttcagattcgttccccaaaagccgaacgtatggtaatttttaatgggaatacagattcactgactttgaatattggtcct |
117 |
Q |
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||||||| || |||||||| ||| ||||||| || | |||||||||||| |||||||||||| |||||||||||||||| ||||||||| |||||||| |
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| T |
28384248 |
ggaaagattatcaaaagaggctcaaattcgtttcctacgagccgaacgtatagtaatttttaataggaatacagattcactaactttgaatcttggtcct |
28384149 |
T |
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| Q |
118 |
agaaatgacaatgacgctattcctgaagtggacctaaatcacgaatttt |
166 |
Q |
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|| |||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
28384148 |
ag-aatgacaatgacgctattcctgaactggacctaaatcacgaatttt |
28384101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 261
Target Start/End: Complemental strand, 11299504 - 11299457
Alignment:
| Q |
214 |
aagggatctatgcgccctctaaggcgtaaaatagcgacaacgaaactt |
261 |
Q |
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||||||||||||| ||||||||||||||||||| |||| |||||||| |
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| T |
11299504 |
aagggatctatgcaccctctaaggcgtaaaataacgacttcgaaactt |
11299457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 162 - 244
Target Start/End: Complemental strand, 2912956 - 2912874
Alignment:
| Q |
162 |
attttttctagtaaattttttacgcgaaccagattttgatcgagatataattaagggatctatgcgccctctaaggcgtaaaa |
244 |
Q |
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|||||||| | |||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
2912956 |
attttttcaattaaattttttacgcgaaccagattatgaccgagatataattaagggatctatgcaccctctaagtcgtaaaa |
2912874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 47448262 - 47448189
Alignment:
| Q |
19 |
gaaagactaacaaaagagtttcagattcgttccccaaaagccgaacgtatggtaatttttaatgggaatacagattcactgac |
101 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
47448262 |
gaaagactaacaaaagaggctcagattcgttccccaaaagccaaacg---------ttttaatgggaatacagattcactgac |
47448189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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