View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13866_low_25 (Length: 254)

Name: NF13866_low_25
Description: NF13866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13866_low_25
NF13866_low_25
[»] chr4 (18 HSPs)
chr4 (11-254)||(23622872-23623115)
chr4 (38-207)||(26812511-26812681)
chr4 (38-207)||(26821978-26822148)
chr4 (38-207)||(37059089-37059259)
chr4 (38-207)||(3242302-3242472)
chr4 (38-207)||(54689928-54690098)
chr4 (38-207)||(54699359-54699529)
chr4 (129-250)||(16489947-16490071)
chr4 (38-207)||(3918069-3918239)
chr4 (57-207)||(15842933-15843083)
chr4 (38-207)||(20884464-20884633)
chr4 (38-195)||(50516513-50516670)
chr4 (56-207)||(11482318-11482468)
chr4 (58-172)||(45609484-45609598)
chr4 (81-207)||(18125471-18125594)
chr4 (65-124)||(41902576-41902635)
chr4 (226-254)||(20884665-20884693)
chr4 (226-254)||(50516713-50516741)
[»] chr3 (24 HSPs)
chr3 (11-254)||(17529850-17530093)
chr3 (11-254)||(54624608-54624851)
chr3 (21-254)||(48978623-48978852)
chr3 (21-254)||(48988163-48988392)
chr3 (11-254)||(32877823-32878066)
chr3 (38-207)||(28367668-28367838)
chr3 (38-207)||(28375486-28375656)
chr3 (38-207)||(28383308-28383478)
chr3 (38-207)||(24794561-24794731)
chr3 (56-207)||(28351754-28351905)
chr3 (56-207)||(38529211-38529362)
chr3 (12-197)||(19388773-19388961)
chr3 (38-207)||(5385693-5385862)
chr3 (108-207)||(7784094-7784193)
chr3 (198-254)||(17534976-17535032)
chr3 (60-207)||(13328316-13328462)
chr3 (67-207)||(23487044-23487183)
chr3 (56-207)||(46305608-46305757)
chr3 (68-207)||(4951596-4951735)
chr3 (81-207)||(4361575-4361698)
chr3 (59-122)||(24285474-24285537)
chr3 (226-254)||(5385633-5385661)
chr3 (226-254)||(23486984-23487012)
chr3 (226-254)||(46305789-46305817)
[»] chr5 (31 HSPs)
chr5 (21-254)||(31150634-31150867)
chr5 (21-254)||(5600533-5600766)
chr5 (21-254)||(5610179-5610412)
chr5 (25-254)||(42732580-42732817)
chr5 (38-207)||(22489188-22489358)
chr5 (38-207)||(18569042-18569212)
chr5 (38-207)||(24422280-24422450)
chr5 (38-207)||(30454216-30454386)
chr5 (38-207)||(24412831-24413001)
chr5 (38-207)||(30459274-30459444)
chr5 (56-207)||(30444863-30445014)
chr5 (60-200)||(22118140-22118281)
chr5 (38-207)||(4635948-4636118)
chr5 (38-207)||(33955515-33955684)
chr5 (38-207)||(11223379-11223547)
chr5 (143-247)||(1693787-1693891)
chr5 (60-254)||(26652566-26652768)
chr5 (60-254)||(26924151-26924353)
chr5 (38-207)||(20834434-20834603)
chr5 (38-198)||(24244058-24244218)
chr5 (38-198)||(24290682-24290842)
chr5 (143-254)||(17553913-17554024)
chr5 (56-193)||(16110898-16111038)
chr5 (38-207)||(20036002-20036171)
chr5 (38-198)||(13815388-13815548)
chr5 (25-159)||(22448333-22448467)
chr5 (226-254)||(11223319-11223347)
chr5 (226-254)||(20035942-20035970)
chr5 (226-254)||(22448479-22448507)
chr5 (226-254)||(22457797-22457825)
chr5 (226-254)||(33955716-33955744)
[»] chr2 (16 HSPs)
chr2 (21-254)||(1800446-1800679)
chr2 (11-254)||(22632355-22632598)
chr2 (21-254)||(1790952-1791181)
chr2 (56-207)||(31710500-31710651)
chr2 (56-207)||(24022776-24022927)
chr2 (25-207)||(14273207-14273389)
chr2 (38-207)||(35877519-35877688)
chr2 (38-207)||(35885008-35885177)
chr2 (38-207)||(36724721-36724890)
chr2 (59-199)||(3396934-3397073)
chr2 (67-188)||(18578707-18578828)
chr2 (151-207)||(37910342-37910398)
chr2 (226-254)||(3396866-3396894)
chr2 (226-254)||(35877459-35877487)
chr2 (226-254)||(35884948-35884976)
chr2 (226-254)||(36724661-36724689)
[»] scaffold0247 (1 HSPs)
scaffold0247 (12-254)||(24546-24788)
[»] scaffold0021 (5 HSPs)
scaffold0021 (11-254)||(99936-100179)
scaffold0021 (65-207)||(124050-124191)
scaffold0021 (193-254)||(180859-180920)
scaffold0021 (143-207)||(143172-143235)
scaffold0021 (226-254)||(143112-143140)
[»] scaffold0269 (1 HSPs)
scaffold0269 (11-210)||(14803-15002)
[»] chr6 (13 HSPs)
chr6 (74-254)||(12415017-12415197)
chr6 (38-207)||(23895631-23895801)
chr6 (59-188)||(10259816-10259945)
chr6 (56-207)||(18420554-18420705)
chr6 (38-207)||(22066296-22066465)
chr6 (38-207)||(23884495-23884664)
chr6 (38-207)||(14102309-14102480)
chr6 (56-182)||(11421485-11421611)
chr6 (54-199)||(23110251-23110396)
chr6 (57-200)||(12173430-12173573)
chr6 (38-207)||(17512238-17512406)
chr6 (226-254)||(22066236-22066264)
chr6 (226-254)||(23884435-23884463)
[»] chr1 (14 HSPs)
chr1 (36-221)||(26906259-26906445)
chr1 (23-198)||(28310016-28310188)
chr1 (25-207)||(5378427-5378610)
chr1 (38-207)||(14272033-14272202)
chr1 (38-207)||(14281899-14282068)
chr1 (68-207)||(15810030-15810169)
chr1 (56-199)||(21633591-21633733)
chr1 (67-188)||(30676810-30676931)
chr1 (65-207)||(40999078-40999221)
chr1 (38-207)||(3470952-3471121)
chr1 (56-163)||(21919465-21919572)
chr1 (226-254)||(14272234-14272262)
chr1 (226-254)||(14282100-14282128)
chr1 (226-254)||(21919580-21919608)
[»] chr8 (28 HSPs)
chr8 (25-254)||(31575414-31575651)
chr8 (38-207)||(20714072-20714242)
chr8 (56-207)||(7789112-7789263)
chr8 (38-207)||(42712193-42712362)
chr8 (38-207)||(20044821-20044990)
chr8 (58-198)||(25051099-25051238)
chr8 (60-207)||(12925357-12925503)
chr8 (25-207)||(15833953-15834135)
chr8 (25-207)||(20030182-20030363)
chr8 (38-198)||(18883175-18883335)
chr8 (58-198)||(25037062-25037201)
chr8 (67-207)||(12767634-12767773)
chr8 (56-198)||(18251841-18251982)
chr8 (38-198)||(18232939-18233099)
chr8 (38-198)||(18242390-18242550)
chr8 (60-163)||(24634014-24634117)
chr8 (38-165)||(12915503-12915631)
chr8 (56-198)||(18143463-18143604)
chr8 (38-163)||(33592149-33592275)
chr8 (38-163)||(33601788-33601914)
chr8 (56-198)||(4843756-4843899)
chr8 (36-188)||(24096088-24096241)
chr8 (56-163)||(42896183-42896290)
chr8 (224-254)||(18143642-18143672)
chr8 (110-207)||(21372727-21372824)
chr8 (226-254)||(12925297-12925325)
chr8 (226-254)||(20044761-20044789)
chr8 (226-254)||(42712394-42712422)
[»] chr7 (19 HSPs)
chr7 (11-254)||(4306547-4306798)
chr7 (25-207)||(7593009-7593191)
chr7 (36-196)||(15174554-15174715)
chr7 (38-207)||(14634793-14634962)
chr7 (143-254)||(14777368-14777479)
chr7 (57-200)||(19352624-19352767)
chr7 (38-207)||(14644493-14644662)
chr7 (38-207)||(33292192-33292361)
chr7 (38-207)||(15947388-15947557)
chr7 (143-254)||(15229506-15229617)
chr7 (38-198)||(11634345-11634505)
chr7 (56-207)||(9736949-9737099)
chr7 (38-200)||(32818006-32818168)
chr7 (38-163)||(13874432-13874557)
chr7 (71-138)||(48710057-48710124)
chr7 (226-254)||(9736889-9736917)
chr7 (226-254)||(14634994-14635022)
chr7 (226-254)||(14644694-14644722)
chr7 (226-254)||(28344149-28344177)
[»] scaffold0028 (2 HSPs)
scaffold0028 (56-207)||(94465-94616)
scaffold0028 (38-207)||(103887-104057)
[»] scaffold0040 (2 HSPs)
scaffold0040 (38-207)||(30838-31008)
scaffold0040 (65-207)||(10045-10187)
[»] scaffold0482 (1 HSPs)
scaffold0482 (56-207)||(3536-3687)
[»] scaffold0001 (1 HSPs)
scaffold0001 (38-207)||(408331-408501)
[»] scaffold0223 (1 HSPs)
scaffold0223 (57-196)||(27088-27231)
[»] scaffold0206 (1 HSPs)
scaffold0206 (25-207)||(2112-2293)
[»] scaffold0010 (1 HSPs)
scaffold0010 (38-198)||(256970-257130)
[»] scaffold0053 (2 HSPs)
scaffold0053 (38-163)||(2276-2402)
scaffold0053 (226-254)||(2410-2438)
[»] scaffold0334 (1 HSPs)
scaffold0334 (38-103)||(12563-12629)


Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 11 - 254
Target Start/End: Complemental strand, 23623115 - 23622872
Alignment:
Q  11 gagagatgaaagagaacacaagagaatttatcctggttcgcctaaccggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgc 110  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  23623115 gagagaagaaagagaacacaagagaatttatcctggttcgcctaaccggctacgtccagtccccacactacgtgtgagattatccactatagtatcctgc 23623016  T
Q  111 tatcagaaacttctgaatagcactataatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattcttgat 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  23623015 tatcagaaacttctgaatagcactataatatgttgatcacaccagatcagtctgttacactctgtattatcaacctcagcaggcttctacgattcttgat 23622916  T
Q  211 cacacaagaaaagttctatctcaaactattaagcccaatagact 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  23622915 cacacaagaaaagttctatctcaaactattaagcccaatagact 23622872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 38 - 207
Target Start/End: Complemental strand, 26812681 - 26812511
Alignment:
Q  38 ttatcctggttcgcctaacc-ggctacgtccagtccccacactacgtgtgagattatccagtatagtatcct-gctatcagaaacttctgaatagcacta 135  Q
    |||||||||||| || |||| |||||| ||||||||||||||  |||||||||||||||| |||||| | || |||| ||||||||||||| ||||||||    
T  26812681 ttatcctggttcaccaaacccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaacttctgactagcacta 26812582  T
Q  136 taatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
     ||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||| ||||||    
T  26812581 caatatcttgatcacaccagatcagtccgtaacac-ctgtattatcaacctcagcaggcttatacaattctt 26812511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 38 - 207
Target Start/End: Complemental strand, 26822148 - 26821978
Alignment:
Q  38 ttatcctggttcgcctaacc-ggctacgtccagtccccacactacgtgtgagattatccagtatagtatcct-gctatcagaaacttctgaatagcacta 135  Q
    |||||||||||| || |||| |||||| ||||||||||||||  |||||||||||||||| |||||| | || |||| ||||||||||||| ||||||||    
T  26822148 ttatcctggttcaccaaacccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaacttctgactagcacta 26822049  T
Q  136 taatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
     ||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||| ||||||    
T  26822048 caatatcttgatcacaccagatcagtccgtaacac-ctgtattatcaacctcagcaggcttatacaattctt 26821978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 38 - 207
Target Start/End: Complemental strand, 37059259 - 37059089
Alignment:
Q  38 ttatcctggttcgcctaacc-ggctacgtccagtccccacactacgtgtgagattatccagtatagtatcct-gctatcagaaacttctgaatagcacta 135  Q
    |||||||||||| || |||| |||||| ||||||||||||||  |||||||||||||||| |||||| | || |||| ||||||||||||| ||||||||    
T  37059259 ttatcctggttcaccaaacccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaacttctgactagcacta 37059160  T
Q  136 taatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
     || || |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||    
T  37059159 caagatcttgatcacaccagatcagtccgttacac-ctgtattatcaacctcagcaggcttatacaattctt 37059089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 38 - 207
Target Start/End: Original strand, 3242302 - 3242472
Alignment:
Q  38 ttatcctggttcgcctaacc-ggctacgtccagtccccacactacgtgtgagattatccagtatagtatcct-gctatcagaaacttctgaatagcacta 135  Q
    |||||||||||| || |||| |||||| ||||||||||||||  |||||||||||||||| |||||| | || |||| ||||||||||||| ||||||||    
T  3242302 ttatcctggttcaccaaacccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaacttctgactagcacta 3242401  T
Q  136 taatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
     ||| | ||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||| ||||||    
T  3242402 caatttcttgatcacaccagatcagtccgtaac-ctctgtattatcaacctcagcaggcttatacaattctt 3242472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 38 - 207
Target Start/End: Original strand, 54689928 - 54690098
Alignment:
Q  38 ttatcctggttcgcctaacc-ggctacgtccagtccccacactacgtgtgagattatccagtatagtatcct-gctatcagaaacttctgaatagcacta 135  Q
    |||||||||||| || |||| |||||| ||||||||||||||  |||||||||||||||| |||||| | || |||| ||||||||||||| ||||||||    
T  54689928 ttatcctggttcaccaaacccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaacttctgactagcacta 54690027  T
Q  136 taatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
     ||| | ||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||| ||||||    
T  54690028 caatttcttgatcacaccagatcagtccgtaac-ctctgtattatcaacctcagcaggcttatacaattctt 54690098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 38 - 207
Target Start/End: Original strand, 54699359 - 54699529
Alignment:
Q  38 ttatcctggttcgcctaacc-ggctacgtccagtccccacactacgtgtgagattatccagtatagtatcct-gctatcagaaacttctgaatagcacta 135  Q
    |||||||||||| || |||| |||||| ||||||||||||||  |||||||||||||||| |||||| | || |||| ||||||||||||| ||||||||    
T  54699359 ttatcctggttcaccaaacccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaacttctgactagcacta 54699458  T
Q  136 taatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
     ||| | ||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||| ||||||    
T  54699459 caatttcttgatcacaccagatcagtccgtaac-ctctgtattatcaacctcagcaggcttatacaattctt 54699529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 129 - 250
Target Start/End: Original strand, 16489947 - 16490071
Alignment:
Q  129 agcactataatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattcttgatcacac---aagaaaagtt 225  Q
    ||||||||||| |||||||||||||| ||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||   || |||| ||    
T  16489947 agcactataatttgttgatcacaccatatcagtctgttacactcagtattatcaacctcagcagacttctacgattcttgatcacacaaaaaaaaaaatt 16490046  T
Q  226 ctatctcaaactattaagcccaata 250  Q
    |||||||||||||||||||||||||    
T  16490047 ctatctcaaactattaagcccaata 16490071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 38 - 207
Target Start/End: Complemental strand, 3918239 - 3918069
Alignment:
Q  38 ttatcctggttcgcctaacc-ggctacgtccagtccccacactacgtgtgagattatccagtatagtatcct-gctatcagaaacttctgaatagcacta 135  Q
    |||||||||||| || |||| |||||| ||||||||||||||  |||||||||||||||| |||||| | || |||| ||||||||||||| ||||| ||    
T  3918239 ttatcctggttcaccaaacccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaacttctgactagcatta 3918140  T
Q  136 taatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
     ||| | ||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||| ||||||    
T  3918139 caatttcttgatcacaccagatcagtccgtaac-ctctgtattatcaacctcagcaggcttatacaattctt 3918069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 57 - 207
Target Start/End: Original strand, 15842933 - 15843083
Alignment:
Q  57 cggctacgtccagtccccacactacgtgtgagattatccagtatagta-tcctgctatcagaaacttctgaatagcactataatatgttgatcacaccag 155  Q
    ||||||| ||||||||||||||  |||||||||||||||| ||||||  || ||||| ||||||||||||| ||||||||||| || ||||||||| |||    
T  15842933 cggctacttccagtccccacacctcgtgtgagattatccactatagttgtcttgctaacagaaacttctgactagcactataagatcttgatcacatcag 15843032  T
Q  156 atcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
    ||||||| ||||||| ||||||||||||||| ||||||||||||| ||||||    
T  15843033 atcagtctgttacac-ctgtattatcaacctaagcaggcttctacaattctt 15843083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 38 - 207
Target Start/End: Original strand, 20884464 - 20884633
Alignment:
Q  38 ttatcctggttcgcctaacc-ggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactat 136  Q
    |||||||||||| || |||| |||||| ||||||||||||||| |||||||||||||||| |||||||| | | |   |||||||||| |  | ||||||    
T  20884464 ttatcctggttccccaaacccggctacttccagtccccacacttcgtgtgagattatccactatagtatgcagttggtagaaacttctaaccaacactat 20884563  T
Q  137 aatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
    ||  | ||||||||||||||||||||||| || | ||||||||||||||||||||||||||||| ||||||    
T  20884564 aaggttttgatcacaccagatcagtccgtaac-cactgtattatcaacctcagcaggcttctacaattctt 20884633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 38 - 195
Target Start/End: Original strand, 50516513 - 50516670
Alignment:
Q  38 ttatcctggttcgcctaaccgg-ctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactat 136  Q
    |||||||||||| || |||| | |||| ||||||||||||||| |||||||||||||||| |||||||| | | |   ||||| |||| |  | ||||||    
T  50516513 ttatcctggttccccaaacccgactacttccagtccccacacttcgtgtgagattatccactatagtattccgttggtagaaatttctaaccaacactat 50516612  T
Q  137 aatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggct 195  Q
    ||  | ||||||||||||||||||||||| || || |||||||||||||||||||||||    
T  50516613 aaggtcttgatcacaccagatcagtccgtaaccct-tgtattatcaacctcagcaggct 50516670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 56 - 207
Target Start/End: Complemental strand, 11482468 - 11482318
Alignment:
Q  56 ccggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactataatatgttgatcacaccag 155  Q
    |||||||| || |||||||||||| |||||||||||||||| |||||||| | | |   |||||||||| |  | ||||||||  | || |||||||||     
T  11482468 ccggctacttctagtccccacacttcgtgtgagattatccactatagtatacagttggtagaaacttctaaccaacactataaggtctttatcacaccat 11482369  T
Q  156 atcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
    |||||||||| || | ||||||||||||||||||| ||||||||| ||||||    
T  11482368 atcagtccgtaaccc-ctgtattatcaacctcagccggcttctacaattctt 11482318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 58 - 172
Target Start/End: Complemental strand, 45609598 - 45609484
Alignment:
Q  58 ggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactataatatgttgatcacaccagat 157  Q
    |||||| |||||||| | |||| ||| |||||||||||| ||| ||||||  ||||||||||||| ||||||||||||||     |||||||||||||||    
T  45609598 ggctacttccagtcctcgcacttcgtatgagattatccactatggtatccaactatcagaaacttttgaatagcactatatgtccttgatcacaccagat 45609499  T
Q  158 cagtccgttacactc 172  Q
    || || |||||||||    
T  45609498 caatctgttacactc 45609484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 81 - 207
Target Start/End: Original strand, 18125471 - 18125594
Alignment:
Q  81 cgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactataatatgttgatcacaccagatcagtccgttacactctgtattat 180  Q
    |||||||||||||||| ||||||||||||||| || |||||||| |  |||| |  ||    ||||||||| ||||||| || |||||||  ||||||||    
T  18125471 cgtgtgagattatccattatagtatcctgctaacaaaaacttcttaccagcattgaaaa---ttgatcacaacagatcattctgttacaccttgtattat 18125567  T
Q  181 caacctcagcaggcttctacgattctt 207  Q
    |||||||||||| ||||| | ||||||    
T  18125568 caacctcagcagacttcttcaattctt 18125594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 124
Target Start/End: Original strand, 41902576 - 41902635
Alignment:
Q  65 tccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttct 124  Q
    |||||||||||  || | |||||||||||||| ||||||||||  |||||||||||||||    
T  41902576 tccagtccccaggctccttgtgagattatccactatagtatccaactatcagaaacttct 41902635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 254
Target Start/End: Original strand, 20884665 - 20884693
Alignment:
Q  226 ctatctcaaactattaagcccaatagact 254  Q
    |||||||||||||||||||||||||||||    
T  20884665 ctatctcaaactattaagcccaatagact 20884693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 254
Target Start/End: Original strand, 50516713 - 50516741
Alignment:
Q  226 ctatctcaaactattaagcccaatagact 254  Q
    |||||||||||||||||||||||||||||    
T  50516713 ctatctcaaactattaagcccaatagact 50516741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 11 - 254
Target Start/End: Original strand, 17529850 - 17530093
Alignment:
Q  11 gagagatgaaagagaacacaagagaatttatcctggttcgcctaaccggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgc 110  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  17529850 gagagaagagagagaacacaagagaatttatcctggttcgcctaaccggctacgtccagtccccacactacgtgtgagattatccactatagtatcctgc 17529949  T
Q  111 tatcagaaacttctgaatagcactataatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattcttgat 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17529950 tatcagaaacttctgaatagcactataatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattcttgat 17530049  T
Q  211 cacacaagaaaagttctatctcaaactattaagcccaatagact 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  17530050 cacacaagaaaagttctatctcaaactattaagcccaatagact 17530093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 11 - 254
Target Start/End: Complemental strand, 54624851 - 54624608
Alignment:
Q  11 gagagatgaaagagaacacaagagaatttatcctggttcgcctaaccggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgc 110  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  54624851 gagagaagaaagagaacacaagagaatttatcctggttcgcctaaccggctacgtccagtccccacactacgtgtgagattatccactatagtatcctgc 54624752  T
Q  111 tatcagaaacttctgaatagcactataatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattcttgat 210  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  54624751 tatcagaaacttctgaatagcactataatatgttgatcataccagatcagtctgttacactctgtattatcaacctcagcaggcttctacgattcttgat 54624652  T
Q  211 cacacaagaaaagttctatctcaaactattaagcccaatagact 254  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  54624651 cacacaagaaaagatctatctcaaactattaagcccaatagact 54624608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 21 - 254
Target Start/End: Complemental strand, 48978852 - 48978623
Alignment:
Q  21 agagaacacaagagaatttatcctggttcgcctaaccggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaac 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    |||||||||    
T  48978852 agagaacacaagagaatttatcctggttcgcctaaccggctacgtccagtccccacactacgtgtgagattatccactatagtatcc----atcagaaac 48978757  T
Q  121 ttctgaatagcactataatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattcttgatcacacaagaa 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48978756 ttctgaatagcactataatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattcttgatcacacaagaa 48978657  T
Q  221 aagttctatctcaaactattaagcccaatagact 254  Q
    ||||||||||||||||||||||||||||||||||    
T  48978656 aagttctatctcaaactattaagcccaatagact 48978623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 21 - 254
Target Start/End: Complemental strand, 48988392 - 48988163
Alignment:
Q  21 agagaacacaagagaatttatcctggttcgcctaaccggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaac 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    |||||||||    
T  48988392 agagaacacaagagaatttatcctggttcgcctaaccggctacgtccagtccccacactacgtgtgagattatccactatagtatcc----atcagaaac 48988297  T
Q  121 ttctgaatagcactataatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattcttgatcacacaagaa 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48988296 ttctgaatagcactataatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattcttgatcacacaagaa 48988197  T
Q  221 aagttctatctcaaactattaagcccaatagact 254  Q
    ||||||||||||||||||||||||||||||||||    
T  48988196 aagttctatctcaaactattaagcccaatagact 48988163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 11 - 254
Target Start/End: Complemental strand, 32878066 - 32877823
Alignment:
Q  11 gagagatgaaagagaacacaagagaatttatcctggttcgcctaaccggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgc 110  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||    
T  32878066 gagagaagagagagaacacaagagaatttatcctggttcgcctaaccggctacgtccagtccccacactacgtgtgagattatccactatagtatcatgc 32877967  T
Q  111 tatcagaaacttctgaatagcactataatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattcttgat 210  Q
    ||||| ||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  32877966 tatcataaacttctgaataacactataatttgttgatcacaccagatcagtctgttacactctgtattatcaacctcagcaggcttctacgattcttgat 32877867  T
Q  211 cacacaagaaaagttctatctcaaactattaagcccaatagact 254  Q
    ||||||||||||||| | ||||||||||||| || |||||||||    
T  32877866 cacacaagaaaagttatgtctcaaactattatgctcaatagact 32877823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 38 - 207
Target Start/End: Original strand, 28367668 - 28367838
Alignment:
Q  38 ttatcctggttcgcctaacc-ggctacgtccagtccccacactacgtgtgagattatccagtatagtatcct-gctatcagaaacttctgaatagcacta 135  Q
    |||||||||||| || |||| |||||| ||||||||||||||  |||||||||||||||| |||||| | || |||| ||||||||||||| ||||||||    
T  28367668 ttatcctggttcaccaaacccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaacttctgactagcacta 28367767  T
Q  136 taatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
     ||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||| ||||||    
T  28367768 caatatcttgatcacaccagatcagtccgtaac-ctctgtattatcaacctcagcaggcttatacaattctt 28367838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 38 - 207
Target Start/End: Original strand, 28375486 - 28375656
Alignment:
Q  38 ttatcctggttcgcctaacc-ggctacgtccagtccccacactacgtgtgagattatccagtatagtatcct-gctatcagaaacttctgaatagcacta 135  Q
    |||||||||||| || |||| |||||| ||||||||||||||  |||||||||||||||| |||||| | || |||| ||||||||||||| ||||||||    
T  28375486 ttatcctggttcaccaaacccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaacttctgactagcacta 28375585  T
Q  136 taatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
     ||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||| ||||||    
T  28375586 caatatcttgatcacaccagatcagtccgtaac-ctctgtattatcaacctcagcaggcttatacaattctt 28375656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 38 - 207
Target Start/End: Original strand, 28383308 - 28383478
Alignment:
Q  38 ttatcctggttcgcctaacc-ggctacgtccagtccccacactacgtgtgagattatccagtatagtatcct-gctatcagaaacttctgaatagcacta 135  Q
    |||||||||||| || |||| |||||| ||||||||||||||  |||||||||||||||| |||||| | || |||| ||||||||||||| ||||||||    
T  28383308 ttatcctggttcaccaaacccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaacttctgactagcacta 28383407  T
Q  136 taatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
     ||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||| ||||||    
T  28383408 caatatcttgatcacaccagatcagtccgtaac-ctctgtattatcaacctcagcaggcttatacaattctt 28383478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 38 - 207
Target Start/End: Original strand, 24794561 - 24794731
Alignment:
Q  38 ttatcctggttcgcctaacc-ggctacgtccagtccccacactacgtgtgagattatccagtatagtatcct-gctatcagaaacttctgaatagcacta 135  Q
    |||||||||||| || |||| |||||| ||||||||||||||  |||||||||||||||| |||||| | || |||| ||||||||||||| ||||||||    
T  24794561 ttatcctggttcaccaaacccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaacttctgactagcacta 24794660  T
Q  136 taatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
     ||| | ||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||| ||||||    
T  24794661 caatttcttgatcacaccagatcagtccgtaac-ctctgtattatcaacctcagcaggcttatacaattctt 24794731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 56 - 207
Target Start/End: Original strand, 28351754 - 28351905
Alignment:
Q  56 ccggctacgtccagtccccacactacgtgtgagattatccagtatagtatcct-gctatcagaaacttctgaatagcactataatatgttgatcacacca 154  Q
    |||||||| ||||||||||||||  |||||||||||||||| |||||| | || |||| ||||||||||||| |||||||| ||||| ||||||||||||    
T  28351754 ccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaacttctgactagcactacaatatcttgatcacacca 28351853  T
Q  155 gatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
    ||||||||||| || ||||||||||||||||| ||||||||| ||| ||||||    
T  28351854 gatcagtccgtaac-ctctgtattatcaaccttagcaggcttatacaattctt 28351905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 56 - 207
Target Start/End: Original strand, 38529211 - 38529362
Alignment:
Q  56 ccggctacgtccagtccccacactacgtgtgagattatccagtatagta-tcctgctatcagaaacttctgaatagcactataatatgttgatcacacca 154  Q
    |||||||| |||||| |||||||  |||||||||||||||| ||||||  || ||||| |||||| |||||| ||||||||||| || ||||||||||||    
T  38529211 ccggctacttccagtgcccacacctcgtgtgagattatccactatagttgtcttgctaacagaaatttctgactagcactataagatcttgatcacacca 38529310  T
Q  155 gatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
    ||| |||| |||||||| ||||||||||||||||| |||||||||| ||||||    
T  38529311 gatgagtctgttacact-tgtattatcaacctcagtaggcttctacaattctt 38529362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 12 - 197
Target Start/End: Complemental strand, 19388961 - 19388773
Alignment:
Q  12 agagatgaaagagaacacaagagaatttatcctggttcgcctaac-cggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgc 110  Q
    ||||| |||||||||||||||||  ||||||||||||| || ||  ||||||| || |||||||||||| |||||||||||||| | |||||||| | ||    
T  19388961 agagaagaaagagaacacaagagt-tttatcctggttcaccaaaatcggctacttcaagtccccacacttcgtgtgagattatcgactatagtattcagc 19388863  T
Q  111 tat--cagaaacttctgaatagcactataatatgttgatcacaccagatcagtccg-ttacactctgtattatcaacctcagcaggcttc 197  Q
    |||  || ||||||||||||||||||||||  ||||||| |||||| ||||||| | || |||| |||||||| | ||||||||||||||    
T  19388862 tatatcataaacttctgaatagcactataagttgttgatgacaccatatcagtctgattgcactatgtattattatcctcagcaggcttc 19388773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 38 - 207
Target Start/End: Complemental strand, 5385862 - 5385693
Alignment:
Q  38 ttatcctggttcgcctaacc-ggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactat 136  Q
    |||||||||||| || |||| |||||| ||||||||||||||| |||||||||||||||| |||||||| | |||   |||||||||| |  | ||||||    
T  5385862 ttatcctggttcaccaaacccggctacttccagtccccacacttcgtgtgagattatccactatagtatacagctgatagaaacttctaaccaacactat 5385763  T
Q  137 aatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
    ||  | |||||||||||||||||||  || || | |||||| |||||||||||||||||||||| ||||||    
T  5385762 aaggtcttgatcacaccagatcagtatgtaac-cactgtatcatcaacctcagcaggcttctacaattctt 5385693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 108 - 207
Target Start/End: Original strand, 7784094 - 7784193
Alignment:
Q  108 tgctatcagaaacttctgaatagcactataatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
    ||||| ||||||||| ||| || ||||||||  | |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||    
T  7784094 tgctaacagaaacttatgactaacactataaggtcttgatcacaccagatcagtctgttacaccctgtattatcaacctcagcaggcttctacaattctt 7784193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 198 - 254
Target Start/End: Original strand, 17534976 - 17535032
Alignment:
Q  198 tacgattcttgatcacacaagaaaagttctatctcaaactattaagcccaatagact 254  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17534976 tacgattcttgatcacacaagaaaagttctatctcaaactattaagcccaatagact 17535032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 60 - 207
Target Start/End: Original strand, 13328316 - 13328462
Alignment:
Q  60 ctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactataatatgttgatcacaccagatca 159  Q
    |||| ||||||||||||||| |||||||||||||||| |||||||| | | |   |||||||||| |  | |||||| |  | |||||||||||||||||    
T  13328316 ctacttccagtccccacacttcgtgtgagattatccactatagtatacagttggtagaaacttctaaccaacactattaggtcttgatcacaccagatca 13328415  T
Q  160 gtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
    |||||| || || ||||||||||||||||||| |||||||| ||||||    
T  13328416 gtccgtaaccct-tgtattatcaacctcagcaagcttctacaattctt 13328462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 67 - 207
Target Start/End: Complemental strand, 23487183 - 23487044
Alignment:
Q  67 cagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactataatatgttgatcacaccagatcagtccgtt 166  Q
    ||||||||||| | |||||||||||||||| |||||||| | | |   |||||||||| |  | ||||||||  | |||||||||||||||||||| ||     
T  23487183 cagtccccacatttcgtgtgagattatccactatagtattcagttggtagaaacttctaaccaacactataaggtcttgatcacaccagatcagtctgta 23487084  T
Q  167 acactctgtattatcaacctcagcaggcttctacgattctt 207  Q
    || || |||||||||||||||||||||||||||| ||||||    
T  23487083 accct-tgtattatcaacctcagcaggcttctacaattctt 23487044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 56 - 207
Target Start/End: Original strand, 46305608 - 46305757
Alignment:
Q  56 ccggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactataatatgttgatcacaccag 155  Q
    |||||||| ||||||||||||||| ||| |||||||||||| | |||||| | | |   |||||||||| |  | ||||||||  | |||||||||||||    
T  46305608 ccggctacttccagtccccacacttcgt-tgagattatccactttagtatacagttggtagaaacttctaaccaacactataaggtcttgatcacaccag 46305706  T
Q  156 atcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
    ||||||| || || | ||||||||||||||||||||||||||||| ||||||    
T  46305707 atcagtctgtaac-cactgtattatcaacctcagcaggcttctacaattctt 46305757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 68 - 207
Target Start/End: Complemental strand, 4951735 - 4951596
Alignment:
Q  68 agtccccacactacgtgtgagattatccagtatagta-tcctgctatcagaaacttctgaatagcactataatatgttgatcacaccagatcagtccgtt 166  Q
    ||||| |||||  |||||||||||||||| |||| |  || ||||| |||||| |||||| |||||||| ||  | ||| |||||||||||||||| |||    
T  4951735 agtcctcacacctcgtgtgagattatccactatatttgtcttgctaacagaaatttctgactagcactacaaggtattggtcacaccagatcagtctgtt 4951636  T
Q  167 acactctgtattatcaacctcagcaggcttctacgattctt 207  Q
    |||| ||||||||||||||||| ||| ||||||| ||||||    
T  4951635 acac-ctgtattatcaacctcaacagccttctacaattctt 4951596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 81 - 207
Target Start/End: Original strand, 4361575 - 4361698
Alignment:
Q  81 cgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactataatatgttgatcacaccagatcagtccgttacactctgtattat 180  Q
    |||||||||||||||| ||||||||||||||| || |||||||| |  |||| |  ||    ||||||||| ||||||| || |||||||  ||||||||    
T  4361575 cgtgtgagattatccattatagtatcctgctaacaaaaacttcttaccagcattgaaaa---ttgatcacaacagatcattctgttacaccttgtattat 4361671  T
Q  181 caacctcagcaggcttctacgattctt 207  Q
    |||||||||||| ||||| | ||||||    
T  4361672 caacctcagcagacttcttcaattctt 4361698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 122
Target Start/End: Complemental strand, 24285537 - 24285474
Alignment:
Q  59 gctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaactt 122  Q
    ||||| |||| |||| ||||| |||||||||||||||| |||||||| | ||||||||||||||    
T  24285537 gctacttccactccctacacttcgtgtgagattatccactatagtattcagctatcagaaactt 24285474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 254
Target Start/End: Complemental strand, 5385661 - 5385633
Alignment:
Q  226 ctatctcaaactattaagcccaatagact 254  Q
    |||||||||||||||||||||||||||||    
T  5385661 ctatctcaaactattaagcccaatagact 5385633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 254
Target Start/End: Complemental strand, 23487012 - 23486984
Alignment:
Q  226 ctatctcaaactattaagcccaatagact 254  Q
    |||||||||||||||||||||||||||||    
T  23487012 ctatctcaaactattaagcccaatagact 23486984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 254
Target Start/End: Original strand, 46305789 - 46305817
Alignment:
Q  226 ctatctcaaactattaagcccaatagact 254  Q
    |||||||||||||||||||||||||||||    
T  46305789 ctatctcaaactattaagcccaatagact 46305817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 21 - 254
Target Start/End: Original strand, 31150634 - 31150867
Alignment:
Q  21 agagaacacaagagaatttatcctggttcgcctaaccggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaac 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  31150634 agagaacacaagagaatttatcctggttcgcctaaccggctacgtccagtccccacactacgtgtgagattatccactatagtatcctgctatcagaaac 31150733  T
Q  121 ttctgaatagcactataatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattcttgatcacacaagaa 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31150734 ttctgaatagcactataatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattcttgatcacacaagaa 31150833  T
Q  221 aagttctatctcaaactattaagcccaatagact 254  Q
    ||||||||||||||||||||||||||||||||||    
T  31150834 aagttctatctcaaactattaagcccaatagact 31150867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 21 - 254
Target Start/End: Complemental strand, 5600766 - 5600533
Alignment:
Q  21 agagaacacaagagaatttatcctggttcgcctaaccggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaac 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  5600766 agagaacacaagagaatttatcctggttcgcctaaccggctacgtccagtccccacaccacgtgtgagattatccactatagtatcctgctatcagaaac 5600667  T
Q  121 ttctgaatagcactataatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattcttgatcacacaagaa 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5600666 ttctgaatagcactataatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattcttgatcacacaagaa 5600567  T
Q  221 aagttctatctcaaactattaagcccaatagact 254  Q
    ||||||||||||||||||||||||||||||||||    
T  5600566 aagttctatctcaaactattaagcccaatagact 5600533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 21 - 254
Target Start/End: Complemental strand, 5610412 - 5610179
Alignment:
Q  21 agagaacacaagagaatttatcctggttcgcctaaccggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaac 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  5610412 agagaacacaagagaatttatcctggttcgcctaaccggctacgtccagtccccacaccacgtgtgagattatccactatagtatcctgctatcagaaac 5610313  T
Q  121 ttctgaatagcactataatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattcttgatcacacaagaa 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5610312 ttctgaatagcactataatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattcttgatcacacaagaa 5610213  T
Q  221 aagttctatctcaaactattaagcccaatagact 254  Q
    ||||||||||||||||||||||||||||||||||    
T  5610212 aagttctatctcaaactattaagcccaatagact 5610179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 25 - 254
Target Start/End: Original strand, 42732580 - 42732817
Alignment:
Q  25 aacacaagagaatttatcctggttcgcctaacc-ggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttc 123  Q
    ||||||||||| || |||||||||| || |||| |||||| ||||||||||||||| |||||||||||||||| |||||||| | ||||  |||||||||    
T  42732580 aacacaagagagtt-atcctggttcaccaaacccggctacttccagtccccacacttcgtgtgagattatccactatagtattcagctagtagaaacttc 42732678  T
Q  124 tgaatagcactataatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattcttgatcacacaagaaaag 223  Q
    | | |||||||||||  | |||||||||||||||||||||   || | ||||||||||||||||| ||||||||||| |||||||||||||||||||| |    
T  42732679 taactagcactataaggtcttgatcacaccagatcagtccagaac-ccctgtattatcaacctcaacaggcttctacaattcttgatcacacaagaaagg 42732777  T
Q  224 ---------ttctatctcaaactattaagcccaatagact 254  Q
             |||||||||||||||||||||||||||||||    
T  42732778 ttgaaactcttctatctcaaactattaagcccaatagact 42732817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 38 - 207
Target Start/End: Complemental strand, 22489358 - 22489188
Alignment:
Q  38 ttatcctggttcgcctaacc-ggctacgtccagtccccacactacgtgtgagattatccagtatagta-tcctgctatcagaaacttctgaatagcacta 135  Q
    |||||||||||| || |||| |||||| ||||||||||||||  |||||||||||||||| ||||||  || ||||| ||||||||| ||| ||||||||    
T  22489358 ttatcctggttcaccaaacccggctacttccagtccccacacctcgtgtgagattatccactatagttgtcttgctaacagaaacttatgactagcacta 22489259  T
Q  136 taatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
    ||| || |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||    
T  22489258 taagatcttgatcacaccagatcagtccgttacac-ctgtattatcaacctcagcagacttctacaattctt 22489188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 38 - 207
Target Start/End: Complemental strand, 18569212 - 18569042
Alignment:
Q  38 ttatcctggttcgcctaacc-ggctacgtccagtccccacactacgtgtgagattatccagtatagtatcct-gctatcagaaacttctgaatagcacta 135  Q
    |||||||||||| || |||| |||||| ||||||||||||||  |||||||||||||||| |||||| | || |||| ||||||||||||| ||||||||    
T  18569212 ttatcctggttcaccaaacccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaacttctgactagcacta 18569113  T
Q  136 taatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
     ||| | ||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||| ||||||    
T  18569112 caatttcttgatcacaccagatcagtccgtaac-ctctgtattatcaacctcagcaggcttatacaattctt 18569042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 38 - 207
Target Start/End: Complemental strand, 24422450 - 24422280
Alignment:
Q  38 ttatcctggttcgcctaa-ccggctacgtccagtccccacactacgtgtgagattatccagtatagtatcct-gctatcagaaacttctgaatagcacta 135  Q
    |||||||||||| || || |||||||| ||||||||||||||  |||||||||||||||| |||||| | || |||| ||||||||||||| ||||||||    
T  24422450 ttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaacttctgactagcacta 24422351  T
Q  136 taatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
     ||| | ||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||| ||||||    
T  24422350 caatttcttgatcacaccagatcagtccgtaac-ctctgtattatcaacctcagcaggcttatacaattctt 24422280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 38 - 207
Target Start/End: Original strand, 30454216 - 30454386
Alignment:
Q  38 ttatcctggttcgcctaacc-ggctacgtccagtccccacactacgtgtgagattatccagtatagtatcct-gctatcagaaacttctgaatagcacta 135  Q
    |||||||||||| || |||| |||||| ||||||||||||||  |||||||||||||||| |||||| | || |||| ||||||||||||| ||||||||    
T  30454216 ttatcctggttcaccaaacccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaacttctgactagcacta 30454315  T
Q  136 taatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
     ||| | ||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||| ||||||    
T  30454316 caatttcttgatcacaccagatcagtccgtaacac-ctgtattatcaacctcagcaggcttatacaattctt 30454386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 38 - 207
Target Start/End: Complemental strand, 24413001 - 24412831
Alignment:
Q  38 ttatcctggttcgcctaa-ccggctacgtccagtccccacactacgtgtgagattatccagtatagtatcct-gctatcagaaacttctgaatagcacta 135  Q
    |||||||||||| || || |||||||| ||||||||||||||  |||||||||||||||| |||||| | || |||| ||||||||||||| ||||||||    
T  24413001 ttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaacttctgactagcacta 24412902  T
Q  136 taatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
     ||| | |||||||||||||||||||| || || ||||||||||||||||||||||||||| ||| ||||||    
T  24412901 caatttcttgatcacaccagatcagtctgtaac-ctctgtattatcaacctcagcaggcttatacaattctt 24412831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 38 - 207
Target Start/End: Original strand, 30459274 - 30459444
Alignment:
Q  38 ttatcctggttcgcctaacc-ggctacgtccagtccccacactacgtgtgagattatccagtatagtatcct-gctatcagaaacttctgaatagcacta 135  Q
    |||||||||||| || |||| |||||| ||||||||||||||  |||||||||||||||| |||||| | || |||| ||||||||||||| ||||||||    
T  30459274 ttatcctggttcaccaaacccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaacttctgactagcacta 30459373  T
Q  136 taatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
     ||| | ||||||||||||||||||||||| |||| |||||||||||||||| |||||||| ||| ||||||    
T  30459374 caatttcttgatcacaccagatcagtccgtaacac-ctgtattatcaacctcggcaggcttatacaattctt 30459444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 56 - 207
Target Start/End: Original strand, 30444863 - 30445014
Alignment:
Q  56 ccggctacgtccagtccccacactacgtgtgagattatccagtatagtatcct-gctatcagaaacttctgaatagcactataatatgttgatcacacca 154  Q
    |||||||| ||||||||||||||  |||||||||||||||| |||||| | || |||| ||||||||||||| |||||||| ||| | ||||||||||||    
T  30444863 ccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaacttctgactagcactacaatttcttgatcacacca 30444962  T
Q  155 gatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
    ||||||||| | |||| ||||||||||||||||||||||||| ||| ||||||    
T  30444963 gatcagtccataacac-ctgtattatcaacctcagcaggcttatacaattctt 30445014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 60 - 200
Target Start/End: Original strand, 22118140 - 22118281
Alignment:
Q  60 ctacgtccagtccccacactacgtgtgagattatccagtatagta-tcctgctatcagaaacttctgaatagcactataatatgttgatcacaccagatc 158  Q
    |||| ||||||||||||||  |||||||||||||||| ||||||  || ||||| |||||||||||||||| ||||||||  | ||||||||||||||||    
T  22118140 ctacttccagtccccacacctcgtgtgagattatccattatagttgtcttgctaacagaaacttctgaataacactataaggtcttgatcacaccagatc 22118239  T
Q  159 agtccgttacactctgtattatcaacctcagcaggcttctac 200  Q
    |||| ||||||  ||||||||||||| |||||| ||||||||    
T  22118240 agtctgttacatcctgtattatcaacatcagcatgcttctac 22118281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 38 - 207
Target Start/End: Complemental strand, 4636118 - 4635948
Alignment:
Q  38 ttatcctggttcgcctaacc-ggctacgtccagtccccacactacgtgtgagattatccagtatagta-tcctgctatcagaaacttctgaatagcacta 135  Q
    |||||||||||| || |||| |||||  | ||||||||||||  |  ||||||||||||| ||||||  || ||||| |||||||||||||  |||||||    
T  4636118 ttatcctggttcaccaaacccggctattttcagtccccacacctcacgtgagattatccactatagttgtcttgctaacagaaacttctgaccagcacta 4636019  T
Q  136 taatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
    ||| || |||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||| ||||||    
T  4636018 taagatcttgatcacaccatatcagtccgttacac-ctgttttatcaacctcagcaggcttctacaattctt 4635948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 38 - 207
Target Start/End: Original strand, 33955515 - 33955684
Alignment:
Q  38 ttatcctggttcgcctaacc-ggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactat 136  Q
    |||||||||||| || |||| |||||| ||||||||||||||| |||||||||||||||| |||||||| | | |   |||||||||| |  | ||||||    
T  33955515 ttatcctggttcaccaaacccggctacttccagtccccacacttcgtgtgagattatccactatagtatgcagttggtagaaacttctaaccaacactat 33955614  T
Q  137 aatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
    ||  | ||||||||||||||||||| ||| || | ||||||||||||||||||||||||||||| ||||||    
T  33955615 aaggtcttgatcacaccagatcagtacgtaac-cactgtattatcaacctcagcaggcttctacaattctt 33955684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 38 - 207
Target Start/End: Complemental strand, 11223547 - 11223379
Alignment:
Q  38 ttatcctggttcgcctaac-cggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactat 136  Q
    |||||||||||| || ||| ||||||| ||||||||||||||| |||||||||||||||| |||||||| | |   | |||||||||| |  | ||||||    
T  11223547 ttatcctggttcaccaaactcggctacttccagtccccacacttcgtgtgagattatccattatagtatacagtggt-agaaacttctaaccaacactat 11223449  T
Q  137 aatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
    ||  | |||||||||||||||||||| || || | ||||||||||||||||||||||||||||| ||||||    
T  11223448 aaggtcttgatcacaccagatcagtctgtaaccc-ctgtattatcaacctcagcaggcttctacaattctt 11223379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 143 - 247
Target Start/End: Original strand, 1693787 - 1693891
Alignment:
Q  143 ttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattcttgatcacacaagaaaagttctatctcaaactattaa 242  Q
    |||||||| |||||||||||  ||||||  |||||| | ||||||| |||  |||||| |||||||||||||||||||||||||||||||||||||||||    
T  1693787 ttgatcacgccagatcagtctattacaccatgtattgttaacctcatcagatttctacaattcttgatcacacaagaaaagttctatctcaaactattaa 1693886  T
Q  243 gccca 247  Q
    |||||    
T  1693887 gccca 1693891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 60 - 254
Target Start/End: Complemental strand, 26652768 - 26652566
Alignment:
Q  60 ctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactataatatgttgatcacaccagatca 159  Q
    |||| ||||||||||||||| |||||||||| ||||| |||||||| | ||||  |||||||||| | ||||||||| |  | |||||||||||| ||||    
T  26652768 ctacttccagtccccacacttcgtgtgagataatccactatagtattcagctaatagaaacttctaactagcactattaggtcttgatcacaccatatca 26652669  T
Q  160 gtccgttacactctgtattatcaacctcagcaggcttctacgattcttgatcacacaagaaaag---------ttctatctcaaactattaagcccaata 250  Q
    || |   || || ||||||||||||||| |  | ||||||| |||||||||||||||||||| |         |||||||||||||||||||||||| ||    
T  26652668 gttcagaaccct-tgtattatcaacctcggtggacttctacaattcttgatcacacaagaaaggttgtaactcttctatctcaaactattaagcccagta 26652570  T
Q  251 gact 254  Q
    ||||    
T  26652569 gact 26652566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 60 - 254
Target Start/End: Complemental strand, 26924353 - 26924151
Alignment:
Q  60 ctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactataatatgttgatcacaccagatca 159  Q
    |||| ||||||||||||||| |||||||||| ||||| |||||||| | ||||  |||||||||| | ||||||||| |  | |||||||||||| ||||    
T  26924353 ctacttccagtccccacacttcgtgtgagataatccactatagtattcagctaatagaaacttctaactagcactattaggtcttgatcacaccatatca 26924254  T
Q  160 gtccgttacactctgtattatcaacctcagcaggcttctacgattcttgatcacacaagaaaag---------ttctatctcaaactattaagcccaata 250  Q
    || |   || || ||||||||||||||| |  | ||||||| |||||||||||||||||||| |         |||||||||||||||||||||||| ||    
T  26924253 gttcagaaccct-tgtattatcaacctcggtggacttctacaattcttgatcacacaagaaaggttgtaactcttctatctcaaactattaagcccagta 26924155  T
Q  251 gact 254  Q
    ||||    
T  26924154 gact 26924151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 38 - 207
Target Start/End: Complemental strand, 20834603 - 20834434
Alignment:
Q  38 ttatcctggttcgcctaacc-ggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactat 136  Q
    |||||||||||| || |||| |||||| ||||||||||||||| |||||||||||||||| |||||||| | | |   |||||||||| |  | ||||||    
T  20834603 ttatcctggttcaccaaacccggctacttccagtccccacactccgtgtgagattatccactatagtatgcagttggtagaaacttctaaccaacactat 20834504  T
Q  137 aatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
    ||  | ||||||| ||||||||||| ||| || | |||||| |||||||||||||||||||| | ||||||    
T  20834503 aaggtcttgatcataccagatcagttcgtaac-cactgtataatcaacctcagcaggcttctccaattctt 20834434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 38 - 198
Target Start/End: Original strand, 24244058 - 24244218
Alignment:
Q  38 ttatcctggttcgcctaa-ccggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactat 136  Q
    |||||||||||| || || |||||||| ||||||||||||||| |||||||||||||||| |||||||| | | |  ||||||||||| |  | |||||     
T  24244058 ttatcctggttcaccaaatccggctacttccagtccccacacttcgtgtgagattatccactatagtattcagttggcagaaacttctaatcaacactac 24244157  T
Q  137 aatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttct 198  Q
    ||  | ||||||||||| |||||||  || || |||||||||||||||||||||||| ||||    
T  24244158 aacgtcttgatcacacccgatcagtttgtaac-ctctgtattatcaacctcagcaggattct 24244218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 38 - 198
Target Start/End: Original strand, 24290682 - 24290842
Alignment:
Q  38 ttatcctggttcgcctaa-ccggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactat 136  Q
    |||||||||||| || || |||||||| ||||||||||||||| |||||||||||||||| |||||||| | | |  ||||||||||| |  | |||||     
T  24290682 ttatcctggttcaccaaatccggctacttccagtccccacacttcgtgtgagattatccactatagtattcagttggcagaaacttctaatcaacactac 24290781  T
Q  137 aatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttct 198  Q
    ||  | ||||||||||| |||||||  || || |||||||||||||||||||||||| ||||    
T  24290782 aacgtcttgatcacacccgatcagtttgtaac-ctctgtattatcaacctcagcaggattct 24290842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 143 - 254
Target Start/End: Original strand, 17553913 - 17554024
Alignment:
Q  143 ttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattcttgatcacacaagaaaagttctatctcaaactattaa 242  Q
    |||||||| ||| |||||||  |||||| ||||||| | ||||| || ||| |||||| |||||||| ||||||||||| ||  ||||||||||||||||    
T  17553913 ttgatcacgccatatcagtctattacaccctgtattgttaaccttagtaggtttctacaattcttgagcacacaagaaaggtcatatctcaaactattaa 17554012  T
Q  243 gcccaatagact 254  Q
    ||||||||||||    
T  17554013 gcccaatagact 17554024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 56 - 193
Target Start/End: Complemental strand, 16111038 - 16110898
Alignment:
Q  56 ccggctacgtccagtccccacactacgtgtgagatta---tccagtatagtatcctgctatcagaaacttctgaatagcactataatatgttgatcacac 152  Q
    |||||||| ||||||||| ||||| ||||||||||||   |||| ||||||||||| |||||| ||||||  ||||| |||||||   | ||||||||||    
T  16111038 ccggctacttccagtcccgacacttcgtgtgagattaccatccattatagtatcctactatcaaaaactttggaataacactatatgttcttgatcacac 16110939  T
Q  153 cagatcagtccgttacactctgtattatcaacctcagcagg 193  Q
    |||| || || |||||| |||||||||||||| ||| ||||    
T  16110938 cagaccaatctgttacattctgtattatcaacatcaacagg 16110898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 38 - 207
Target Start/End: Complemental strand, 20036171 - 20036002
Alignment:
Q  38 ttatcctggttcgcctaacc-ggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactat 136  Q
    |||||||||||| || |||| |||||| ||||||||||||||  | |||||||||||||| |||||||| | | |   |||||||||| |  | ||||||    
T  20036171 ttatcctggttcaccaaacccggctacttccagtccccacacatcatgtgagattatccactatagtatacagttggtagaaacttctaaccaacactat 20036072  T
Q  137 aatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
    ||  | ||||||||||||||||||||| | || | || |||||||||||| ||||||||||||| ||||||    
T  20036071 aaggtcttgatcacaccagatcagtccataac-cactatattatcaaccttagcaggcttctacaattctt 20036002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 38 - 198
Target Start/End: Original strand, 13815388 - 13815548
Alignment:
Q  38 ttatcctggttcgcctaa-ccggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactat 136  Q
    |||||||||||| || || |||||||| ||||||||||||||| | |||||||||||||| |||||||| | | |   |||||||||| |  | ||||||    
T  13815388 ttatcctggttcaccaaatccggctacttccagtccccacacttcatgtgagattatccactatagtattcagttggtagaaacttctaaccaacactat 13815487  T
Q  137 aatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttct 198  Q
    ||  | ||||||||||||||||| || || || || |||||||||||||||| |||||||||    
T  13815488 aaggtcttgatcacaccagatcattctgtaaccct-tgtattatcaacctcaacaggcttct 13815548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 25 - 159
Target Start/End: Original strand, 22448333 - 22448467
Alignment:
Q  25 aacacaagagaatttatcctggttcgcctaa-ccggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttc 123  Q
    ||||||||||| || |||||||||| || || |||||||| ||||||||||||||| |||||||||||||||| |||||||| | | |   |||||||||    
T  22448333 aacacaagagagtt-atcctggttcacccaatccggctacttccagtccccacacttcgtgtgagattatccactatagtatacagttggtagaaacttc 22448431  T
Q  124 tgaatagcactataatatgttgatcacaccagatca 159  Q
    | |  | ||||||||  | |||||||||||||||||    
T  22448432 taaccaacactataaggtcttgatcacaccagatca 22448467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 254
Target Start/End: Complemental strand, 11223347 - 11223319
Alignment:
Q  226 ctatctcaaactattaagcccaatagact 254  Q
    |||||||||||||||||||||||||||||    
T  11223347 ctatctcaaactattaagcccaatagact 11223319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 254
Target Start/End: Complemental strand, 20035970 - 20035942
Alignment:
Q  226 ctatctcaaactattaagcccaatagact 254  Q
    |||||||||||||||||||||||||||||    
T  20035970 ctatctcaaactattaagcccaatagact 20035942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 254
Target Start/End: Original strand, 22448479 - 22448507
Alignment:
Q  226 ctatctcaaactattaagcccaatagact 254  Q
    |||||||||||||||||||||||||||||    
T  22448479 ctatctcaaactattaagcccaatagact 22448507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 254
Target Start/End: Original strand, 22457797 - 22457825
Alignment:
Q  226 ctatctcaaactattaagcccaatagact 254  Q
    |||||||||||||||||||||||||||||    
T  22457797 ctatctcaaactattaagcccaatagact 22457825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 254
Target Start/End: Original strand, 33955716 - 33955744
Alignment:
Q  226 ctatctcaaactattaagcccaatagact 254  Q
    |||||||||||||||||||||||||||||    
T  33955716 ctatctcaaactattaagcccaatagact 33955744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 21 - 254
Target Start/End: Complemental strand, 1800679 - 1800446
Alignment:
Q  21 agagaacacaagagaatttatcctggttcgcctaaccggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaac 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1800679 agagaacacaagagaatttatcctggttcgcctaaccggctacgtccagtccccacactacgtgtgagattatccactatagtatcctgctatcagaaac 1800580  T
Q  121 ttctgaatagcactataatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattcttgatcacacaagaa 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1800579 ttctgaatagcactataatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattcttgatcacacaagaa 1800480  T
Q  221 aagttctatctcaaactattaagcccaatagact 254  Q
    ||||||||||||||||||||||||||||||||||    
T  1800479 aagttctatctcaaactattaagcccaatagact 1800446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 11 - 254
Target Start/End: Complemental strand, 22632598 - 22632355
Alignment:
Q  11 gagagatgaaagagaacacaagagaatttatcctggttcgcctaaccggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgc 110  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  22632598 gagagaagagagagaacacaagagaatttatcctggttcgcctaaccggctacgtccagtccccacactacgtgtgagattatccactatagtatcctgc 22632499  T
Q  111 tatcagaaacttctgaatagcactataatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattcttgat 210  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22632498 tatcagaaacttctgactaacactataatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattcttgat 22632399  T
Q  211 cacacaagaaaagttctatctcaaactattaagcccaatagact 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  22632398 cacacaagaaaagttctatctcaaactattaagcccaatagact 22632355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 21 - 254
Target Start/End: Complemental strand, 1791181 - 1790952
Alignment:
Q  21 agagaacacaagagaatttatcctggttcgcctaaccggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaac 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    |||||||||    
T  1791181 agagaacacaagagaatttatcctggttcgcctaaccggctacgtccagtccccacactacgtgtgagattatccactatagtatcc----atcagaaac 1791086  T
Q  121 ttctgaatagcactataatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattcttgatcacacaagaa 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1791085 ttctgaatagcactataatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattcttgatcacacaagaa 1790986  T
Q  221 aagttctatctcaaactattaagcccaatagact 254  Q
    ||||||||||||||||||||||||||||||||||    
T  1790985 aagttctatctcaaactattaagcccaatagact 1790952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 56 - 207
Target Start/End: Original strand, 31710500 - 31710651
Alignment:
Q  56 ccggctacgtccagtccccacactacgtgtgagattatccagtatagta-tcctgctatcagaaacttctgaatagcactataatatgttgatcacacca 154  Q
    |||||||| ||||||||||||||  |||||||||||||||| ||||||  || ||||| ||||||||||||| ||||||||||| || ||||||||||||    
T  31710500 ccggctacttccagtccccacacctcgtgtgagattatccactatagttgtcttgctaacagaaacttctgactagcactataagatcttgatcacacca 31710599  T
Q  155 gatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||| ||||||    
T  31710600 gatcagtccgttacac-ctgtattatcaacctcagcagacttctacaattctt 31710651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 56 - 207
Target Start/End: Original strand, 24022776 - 24022927
Alignment:
Q  56 ccggctacgtccagtccccacactacgtgtgagattatccagtatagta-tcctgctatcagaaacttctgaatagcactataatatgttgatcacacca 154  Q
    |||||||| |||| | |||||||  |||||||||||||||| ||||||  || ||||| ||||||||||||| ||||||||||| || ||||||||||||    
T  24022776 ccggctacttccaattcccacacctcgtgtgagattatccactatagttgtcttgctaacagaaacttctgactagcactataagatcttgatcacacca 24022875  T
Q  155 gatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||| ||||||    
T  24022876 gatcagtccgttacac-ctgtattatcaacctcaacaggcttctacaattctt 24022927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 25 - 207
Target Start/End: Complemental strand, 14273389 - 14273207
Alignment:
Q  25 aacacaagagaatttatcctggttcgcctaacc-ggctacgtccagtccccacactacgtgtgagattatccagtatagta-tcctgctatcagaaactt 122  Q
    |||||| ||||||| |||||||||| || |||| |||||| | ||||| ||||||  |||||||||||||||| ||||||  || ||||| |||||||||    
T  14273389 aacacacgagaatt-atcctggttcaccaaacccggctactttcagtctccacacctcgtgtgagattatccactatagttgtcttgctaacagaaactt 14273291  T
Q  123 ctgaatagcactataatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
    |||| ||||||||||| || || ||||||||| ||||||| ||||||| || |||||||||||||||||||||||||| ||||||    
T  14273290 ctgactagcactataagatcttaatcacaccatatcagtctgttacac-ctatattatcaacctcagcaggcttctacaattctt 14273207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 38 - 207
Target Start/End: Complemental strand, 35877688 - 35877519
Alignment:
Q  38 ttatcctggttcgcctaacc-ggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactat 136  Q
    |||||||||||| || |||| |||||| ||||||||||||||| |||||||||||||||| |||||||| | | |   |||||||||| |  | ||||||    
T  35877688 ttatcctggttcaccaaacccggctacttccagtccccacacttcgtgtgagattatccactatagtatgcagttggtagaaacttctaaccaacactat 35877589  T
Q  137 aatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
    ||  | ||||||||||||||||||| ||| || | ||||||||||||||||||||||||||||| ||||||    
T  35877588 aaggtcttgatcacaccagatcagttcgtaac-cactgtattatcaacctcagcaggcttctacaattctt 35877519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 38 - 207
Target Start/End: Complemental strand, 35885177 - 35885008
Alignment:
Q  38 ttatcctggttcgcctaacc-ggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactat 136  Q
    |||||||||||| || |||| |||||| ||||||||||||||| |||||||||||||||| |||||||| | | |   |||||||||| |  | ||||||    
T  35885177 ttatcctggttcaccaaacccggctacttccagtccccacacttcgtgtgagattatccactatagtatgcagttggtagaaacttctaaccaacactat 35885078  T
Q  137 aatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
    ||  | ||||||||||||||||||| ||| || | ||||||||||||||||||||||||||||| ||||||    
T  35885077 aaggtcttgatcacaccagatcagttcgtaac-cactgtattatcaacctcagcaggcttctacaattctt 35885008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 38 - 207
Target Start/End: Complemental strand, 36724890 - 36724721
Alignment:
Q  38 ttatcctggttcgcctaacc-ggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactat 136  Q
    |||||||||||| || |||| |||||| ||||||||||||||| |||||||||||||||| |||||||| | | |   |||||||||| |  | ||||||    
T  36724890 ttatcctggttcaccaaacccggctacttccagtccccacacttcgtgtgagattatccactatagtatgcagttggtagaaacttctaaccaacactat 36724791  T
Q  137 aatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
    ||  | ||||||||||||||||||| ||| || | ||||||||||||||||||||||||||||| ||||||    
T  36724790 aaggtcttgatcacaccagatcagttcgtaac-cactgtattatcaacctcagcaggcttctacaattctt 36724721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 59 - 199
Target Start/End: Complemental strand, 3397073 - 3396934
Alignment:
Q  59 gctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactataatatgttgatcacaccagatc 158  Q
    ||||| || |||||||||||| |||||||||||||||| |||||||| | | |   |||||||||| |  | ||||||||  | ||||||||||||||||    
T  3397073 gctacttctagtccccacacttcgtgtgagattatccactatagtatacagttggtagaaacttctaaccaacactataaggtcttgatcacaccagatc 3396974  T
Q  159 agtccgttacactctgtattatcaacctcagcaggcttcta 199  Q
    ||||||| || |  |||||||||||||||||||| ||||||    
T  3396973 agtccgtaac-cattgtattatcaacctcagcagacttcta 3396934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 188
Target Start/End: Complemental strand, 18578828 - 18578707
Alignment:
Q  67 cagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactataatatgttgatcacaccagatcagtccgtt 166  Q
    ||||||||||||   |||||||||||| ||   || |||||| ||| ||||||||| ||| ||| |||||||  | ||||| |||||||| || || |||    
T  18578828 cagtccccacaccttgtgtgagattattcacagtaatatcctcctaacagaaacttttgactaggactataagttcttgataacaccagaccaatctgtt 18578729  T
Q  167 acactctgtattatcaacctca 188  Q
    |||| |||||||||||||||||    
T  18578728 acaccctgtattatcaacctca 18578707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 207
Target Start/End: Complemental strand, 37910398 - 37910342
Alignment:
Q  151 accagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
    |||||||||||| ||||||||||||||||| ||| || ||| |||||||| ||||||    
T  37910398 accagatcagtctgttacactctgtattataaacatcggcatgcttctacaattctt 37910342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 254
Target Start/End: Complemental strand, 3396894 - 3396866
Alignment:
Q  226 ctatctcaaactattaagcccaatagact 254  Q
    |||||||||||||||||||||||||||||    
T  3396894 ctatctcaaactattaagcccaatagact 3396866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 254
Target Start/End: Complemental strand, 35877487 - 35877459
Alignment:
Q  226 ctatctcaaactattaagcccaatagact 254  Q
    |||||||||||||||||||||||||||||    
T  35877487 ctatctcaaactattaagcccaatagact 35877459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 254
Target Start/End: Complemental strand, 35884976 - 35884948
Alignment:
Q  226 ctatctcaaactattaagcccaatagact 254  Q
    |||||||||||||||||||||||||||||    
T  35884976 ctatctcaaactattaagcccaatagact 35884948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 254
Target Start/End: Complemental strand, 36724689 - 36724661
Alignment:
Q  226 ctatctcaaactattaagcccaatagact 254  Q
    |||||||||||||||||||||||||||||    
T  36724689 ctatctcaaactattaagcccaatagact 36724661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 12 - 254
Target Start/End: Complemental strand, 24788 - 24546
Alignment:
Q  12 agagatgaaagagaacacaagagaatttatcctggttcgcctaaccggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgct 111  Q
    ||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  24788 agagaagagagagaacacaagagaatttatcctggttcgcctaaccagctacgtccagtccccacactacgtgtgagattatccactatagtatcctgct 24689  T
Q  112 atcagaaacttctgaatagcactataatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattcttgatc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24688 atcagaaacttctgaatagcactataatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattcttgatc 24589  T
Q  212 acacaagaaaagttctatctcaaactattaagcccaatagact 254  Q
    ||||| |||||||||||| |||||||||||| |||||||||||    
T  24588 acacaggaaaagttctatatcaaactattaaacccaatagact 24546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 11 - 254
Target Start/End: Complemental strand, 100179 - 99936
Alignment:
Q  11 gagagatgaaagagaacacaagagaatttatcctggttcgcctaaccggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgc 110  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  100179 gagagaagagagagaacacaagagaatttatcctggttcgcctaaccggctatgtccagtccccacactacgtgtgagattatccattatagtatcctgc 100080  T
Q  111 tatcagaaacttctgaatagcactataatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattcttgat 210  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| || ||||||| ||||||||||    
T  100079 tatcagaaacttctgaatagcactataatatgttgatcacaccaaatcagtctgttacactctgtattatcaacctcaacaagcttctatgattcttgat 99980  T
Q  211 cacacaagaaaagttctatctcaaactattaagcccaatagact 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  99979 cacacaagaaaagttctatctcaaactattaagcccaatagact 99936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 65 - 207
Target Start/End: Complemental strand, 124191 - 124050
Alignment:
Q  65 tccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactataatatgttgatcacaccagatcagtccg 164  Q
    ||||||||||||||| |||||||||||||||| |||||||| | | |   |||||||||| |  | ||||||||  | ||||||||||||||||||||||    
T  124191 tccagtccccacacttcgtgtgagattatccactatagtatgcagttggtagaaacttctaaccaacactataaggtcttgatcacaccagatcagtccg 124092  T
Q  165 ttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
    | || | ||||||||||||||||||||||||||||| ||||||    
T  124091 taac-cactgtattatcaacctcagcaggcttctacaattctt 124050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 193 - 254
Target Start/End: Complemental strand, 180920 - 180859
Alignment:
Q  193 gcttctacgattcttgatcacacaagaaaagttctatctcaaactattaagcccaatagact 254  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  180920 gcttctatgattcttgatcacacaagaaaagttctatctcaaactattaagcccaatagact 180859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 143 - 207
Target Start/End: Complemental strand, 143235 - 143172
Alignment:
Q  143 ttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
    ||||||||||||||||||||||| || | ||||||||||||||||||||||||||||| ||||||    
T  143235 ttgatcacaccagatcagtccgtaac-cactgtattatcaacctcagcaggcttctacaattctt 143172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 254
Target Start/End: Complemental strand, 143140 - 143112
Alignment:
Q  226 ctatctcaaactattaagcccaatagact 254  Q
    |||||||||||||||||||||||||||||    
T  143140 ctatctcaaactattaagcccaatagact 143112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0269 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: scaffold0269
Description:

Target: scaffold0269; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 11 - 210
Target Start/End: Original strand, 14803 - 15002
Alignment:
Q  11 gagagatgaaagagaacacaagagaatttatcctggttcgcctaaccggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgc 110  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  14803 gagagaagaaagagaacacaagagaatttatcctggttcgcctaaccggctacgtccagtccccacactacgtgtgagattatccactatagtatcctgc 14902  T
Q  111 tatcagaaacttctgaatagcactataatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattcttgat 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  14903 tatcagaaacttctgaatagcactataatatgttgatcacaccagatcagtctgttacactctgtattatcaacctcagcaggcttctacgattcttgat 15002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 149; Significance: 8e-79; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 74 - 254
Target Start/End: Complemental strand, 12415197 - 12415017
Alignment:
Q  74 cacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactataatatgttgatcacaccagatcagtccgttacactct 173  Q
    ||||||||||||||||||||||| |||||||||||  |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  12415197 cacactacgtgtgagattatccattatagtatcctcttatcagaaacttcttaatagcactataataagttgatcacaccagatcagtccgttacactct 12415098  T
Q  174 gtattatcaacctcagcaggcttctacgattcttgatcacacaagaaaagttctatctcaaactattaagcccaatagact 254  Q
    ||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12415097 gtattattaaccatagcaggcttctacgattcttgatcacacaagaaaagttctatctcaaactattaagcccaatagact 12415017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 38 - 207
Target Start/End: Original strand, 23895631 - 23895801
Alignment:
Q  38 ttatcctggttcgcctaacc-ggctacgtccagtccccacactacgtgtgagattatccagtatagtatcct-gctatcagaaacttctgaatagcacta 135  Q
    |||||||||||| || |||| |||||| ||||||||||||||  |||||||||||||||| |||||| | || |||| ||||||||||||| ||||||||    
T  23895631 ttatcctggttcaccaaacccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaacttctgactagcacta 23895730  T
Q  136 taatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
     ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||    
T  23895731 caatatcttgatcacaccagatcagtccgttacac-ctgtattatcaacctcagcaggcttatacaattctt 23895801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 59 - 188
Target Start/End: Original strand, 10259816 - 10259945
Alignment:
Q  59 gctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactataatatgttgatcacaccagatc 158  Q
    ||||| |||||||| |||||| |||||| |||| |||| |||||||||||||||  |||||||||||| |||||||||||  | ||||||||||||||||    
T  10259816 gctacttccagtcctcacacttcgtgtgggattctccactatagtatcctgctaagagaaacttctgactagcactataaattcttgatcacaccagatc 10259915  T
Q  159 agtccgttacactctgtattatcaacctca 188  Q
    |||||||||||| ||||||||| |||||||    
T  10259916 agtccgttacaccctgtattataaacctca 10259945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 56 - 207
Target Start/End: Complemental strand, 18420705 - 18420554
Alignment:
Q  56 ccggctacgtccagtccccacactacgtgtgagattatccagtatagtatcct-gctatcagaaacttctgaatagcactataatatgttgatcacacca 154  Q
    |||||||| ||||||||| ||||  ||||||||||||| || |||||| | || |||| ||||||||||||| ||||||||  | || ||||||||||||    
T  18420705 ccggctacttccagtcccgacacctcgtgtgagattatacactatagttttcttgctaacagaaacttctgactagcactaacaaatcttgatcacacca 18420606  T
Q  155 gatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||| ||||||    
T  18420605 gatcagtccgttacac-ctgtattatcaacctcagcaggcttatacaattctt 18420554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 38 - 207
Target Start/End: Complemental strand, 22066465 - 22066296
Alignment:
Q  38 ttatcctggttcgcctaacc-ggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactat 136  Q
    |||||||||||| || |||| |||||| ||||||||||||||| |||||||||||||||| |||||||| | | |   |||||||||| |  | ||||||    
T  22066465 ttatcctggttcaccaaacccggctacttccagtccccacacttcgtgtgagattatccactatagtatgcagttggtagaaacttctaaccaacactat 22066366  T
Q  137 aatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
    ||  | |||||||||| |||||||||||| || | ||||||||||||||||||||||||||||| ||||||    
T  22066365 aaggtcttgatcacactagatcagtccgtaac-cactgtattatcaacctcagcaggcttctacaattctt 22066296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 38 - 207
Target Start/End: Complemental strand, 23884664 - 23884495
Alignment:
Q  38 ttatcctggttcgcctaacc-ggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactat 136  Q
    |||||||||||| || |||| |||||| ||||||||||||||| ||||||||||| |||| |||||||| | | |   |||||||||| |  | ||||||    
T  23884664 ttatcctggttcaccaaacccggctacttccagtccccacacttcgtgtgagattgtccactatagtatgcagttggtagaaacttctaaccaacactat 23884565  T
Q  137 aatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
    ||  | ||||||||||||||||||||||| || | ||||||||||||||||||||||||||||| ||||||    
T  23884564 aaggtcttgatcacaccagatcagtccgtaac-cactgtattatcaacctcagcaggcttctacaattctt 23884495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 38 - 207
Target Start/End: Complemental strand, 14102480 - 14102309
Alignment:
Q  38 ttatcctggttcgcctaacc-ggctacgtccagtccccacactacgtgtgagattatccagtatagta-tcctgctatcagaaacttctgaatagcacta 135  Q
    |||||||||||| || |||| |||||| ||||||||||||||  | |||||||||||||| ||||||  || ||||| ||||||||| ||| |||||||     
T  14102480 ttatcctggttcaccaaacccggctacttccagtccccacacctcttgtgagattatccactatagttgtcttgctaacagaaacttttgactagcactg 14102381  T
Q  136 taatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
    |||  | ||||||||| |||||||| | ||||||| ||||||||| ||||||||||| ||||||| ||||||    
T  14102380 taaggtcttgatcacaacagatcagcctgttacaccctgtattattaacctcagcagacttctacaattctt 14102309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 56 - 182
Target Start/End: Original strand, 11421485 - 11421611
Alignment:
Q  56 ccggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactataatatgttgatcacaccag 155  Q
    |||||||| ||||||||||||||  |||||||||||||||| ||||||||| || || || ||| |||||| || |||||||| || |||||||||||||    
T  11421485 ccggctacttccagtccccacacctcgtgtgagattatccactatagtatcatgttaacaaaaaattctgactaacactataagatcttgatcacaccag 11421584  T
Q  156 atcagtccgttacactctgtattatca 182  Q
    ||||||| |||||||  ||||||||||    
T  11421585 atcagtctgttacaccatgtattatca 11421611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 54 - 199
Target Start/End: Original strand, 23110251 - 23110396
Alignment:
Q  54 aaccggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactataatatgttgatcacacc 153  Q
    |||| ||||| ||||||||||||||  ||||| |||||||||| |||||||| | |||| ||||||||||||| ||||||||||   | |||||||||||    
T  23110251 aaccagctacttccagtccccacaccccgtgttagattatccactatagtattcggctaacagaaacttctgactagcactatatgttcttgatcacacc 23110350  T
Q  154 agatcagtccgttacactctgtattatcaacctcagcaggcttcta 199  Q
    |||| ||||  |||||| |  |||||||||| ||| ||||||||||    
T  23110351 agataagtctattacacccaatattatcaacatcaacaggcttcta 23110396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 57 - 200
Target Start/End: Complemental strand, 12173573 - 12173430
Alignment:
Q  57 cggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactataatatgttgatcacaccaga 156  Q
    ||||||| | ||||||||||||   |||| |||||||||| ||||||||| ||||| ||||||||| ||| |||||| ||||  | ||||||||||||||    
T  12173573 cggctactttcagtccccacaccttgtgtaagattatccactatagtatcatgctaacagaaacttatgactagcaccataaattcttgatcacaccaga 12173474  T
Q  157 tcagtccgttacactctgtattatcaacctcagcaggcttctac 200  Q
    ||||| ||||| |  |||||  || ||||| || ||||||||||    
T  12173473 tcagttcgttaaatcctgtaaaataaaccttagtaggcttctac 12173430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 207
Target Start/End: Original strand, 17512238 - 17512406
Alignment:
Q  38 ttatcctggttcgcctaac-cggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactat 136  Q
    |||||||||||| || ||| ||||||| | ||||||||||||| | |||||||||||||| |||||||| | | |   |||||||||| |  | ||||||    
T  17512238 ttatcctggttcaccaaactcggctactttcagtccccacacttcttgtgagattatccactatagtatacagttggtagaaacttctaaccaacactat 17512337  T
Q  137 aatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
    ||  | |||||||||| ||||||||| ||   || ||||||||||||||| ||||||||||||| ||||||    
T  17512338 aaagtcttgatcacactagatcagtctgt--aaccctgtattatcaaccttagcaggcttctacaattctt 17512406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 254
Target Start/End: Complemental strand, 22066264 - 22066236
Alignment:
Q  226 ctatctcaaactattaagcccaatagact 254  Q
    |||||||||||||||||||||||||||||    
T  22066264 ctatctcaaactattaagcccaatagact 22066236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 254
Target Start/End: Complemental strand, 23884463 - 23884435
Alignment:
Q  226 ctatctcaaactattaagcccaatagact 254  Q
    |||||||||||||||||||||||||||||    
T  23884463 ctatctcaaactattaagcccaatagact 23884435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 36 - 221
Target Start/End: Original strand, 26906259 - 26906445
Alignment:
Q  36 atttatcctggttcgcctaacc-ggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcact 134  Q
    |||||||||||||| || |||| |||||| || |||||||| ||  |||||||||||||||| |||| |||| || || ||||||||||||| |||||||    
T  26906259 atttatcctggttcaccaaaccaggctacttctagtccccatacctcgtgtgagattatccattataatatcttgttaacagaaacttctgactagcact 26906358  T
Q  135 ataatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattcttgatcacacaagaaa 221  Q
    ||||  | ||| |||||||||||||||| ||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||    
T  26906359 ataagttcttggtcacaccagatcagtctgttacactctgtattatcaacctcagcagacttttacaattcttgatcacacaagaaa 26906445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 23 - 198
Target Start/End: Original strand, 28310016 - 28310188
Alignment:
Q  23 agaacacaagagaatttatcctggttcgcctaaccggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaactt 122  Q
    ||||||||||||| ||||||||| ||| ||||||||||||| ||| ||  ||||||||||||||   ||||||| |||||||||||||||||| ||||||    
T  28310016 agaacacaagaga-tttatcctgattcacctaaccggctacttccggtttccacactacgtgtgg--ttatccactatagtatcctgctatcaaaaactt 28310112  T
Q  123 ctgaatagcactataatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttct 198  Q
    | ||||| ||||||||  ||||||||||||||||||||||||||||| |||||||||| | ||| | |||||||||    
T  28310113 ccgaataacactataagttgttgatcacaccagatcagtccgttacagtctgtattattacccttaacaggcttct 28310188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 25 - 207
Target Start/End: Original strand, 5378427 - 5378610
Alignment:
Q  25 aacacaagagaatttatcctggttcgcctaacc-ggctacgtccagtccccacactacgtgtgagattatccagtatagta-tcctgctatcagaaactt 122  Q
    |||||| ||||||| |||||||||| || |||| |||||| ||||||||||||||  |||||||||||||||| ||||||  || ||||| |||||||||    
T  5378427 aacacaggagaatt-atcctggttcaccaaacccggctacttccagtccccacacctcgtgtgagattatccactatagttgtcttgctaacagaaactt 5378525  T
Q  123 ctgaatagcactataatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
    || | |||||||||||  | |||||||||||||||||||| ||||||| || |||||| ||||||||||| ||||||| ||||||    
T  5378526 ctaactagcactataaggtcttgatcacaccagatcagtctgttacaccctatattataaacctcagcagacttctacaattctt 5378610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 38 - 207
Target Start/End: Original strand, 14272033 - 14272202
Alignment:
Q  38 ttatcctggttcgcctaacc-ggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactat 136  Q
    |||||||||||| || |||| |||||| ||||||||||||||| |||||||||||||||| |||||||| | | |   |||||||||| |  | ||||||    
T  14272033 ttatcctggttcaccaaacccggctacttccagtccccacacttcgtgtgagattatccactatagtatgcagttggtagaaacttctaacaaacactat 14272132  T
Q  137 aatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
    ||  | ||||||||||||||||||||||| || | ||||||||||||||||||||||||||||| ||||||    
T  14272133 aaggtcttgatcacaccagatcagtccgtaac-cactgtattatcaacctcagcaggcttctacaattctt 14272202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 38 - 207
Target Start/End: Original strand, 14281899 - 14282068
Alignment:
Q  38 ttatcctggttcgcctaacc-ggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactat 136  Q
    |||||||||||| || |||| |||||| ||||||||||||||| |||||||||||||||| |||||||| | | |   |||||||||| |  | ||||||    
T  14281899 ttatcctggttcaccaaacccggctacttccagtccccacacttcgtgtgagattatccactatagtatgcagttggtagaaacttctaacaaacactat 14281998  T
Q  137 aatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
    ||  | ||||||||||||||||||||||| || | ||||||||||||||||||||||||||||| ||||||    
T  14281999 aaggtcttgatcacaccagatcagtccgtaac-cactgtattatcaacctcagcaggcttctacaattctt 14282068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 68 - 207
Target Start/End: Original strand, 15810030 - 15810169
Alignment:
Q  68 agtccccacactacgtgtgagattatccagtatagt-atcctgctatcagaaacttctgaatagcactataatatgttgatcacaccagatcagtccgtt 166  Q
    |||||||||||  |||||||||||||||| |||| | ||| || || ||||||||||||| |||||||||||  | ||||||||||||||||||||||||    
T  15810030 agtccccacacctcgtgtgagattatccactataattatcttggtaacagaaacttctgagtagcactataaggtcttgatcacaccagatcagtccgtt 15810129  T
Q  167 acactctgtattatcaacctcagcaggcttctacgattctt 207  Q
    |||| ||||||||||||| || ||| |||||||| ||||||    
T  15810130 acac-ctgtattatcaacttcggcatgcttctacaattctt 15810169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 56 - 199
Target Start/End: Complemental strand, 21633733 - 21633591
Alignment:
Q  56 ccggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactataatatgttgatcacaccag 155  Q
    ||||||||||| ||||||||||||   |||||||||||||| |||||||| || |||  |||||||||||| ||||| |||||  | ||| |||||||||    
T  21633733 ccggctacgtctagtccccacactttttgtgagattatccactatagtattctactagtagaaacttctgactagcattataaggtcttggtcacaccag 21633634  T
Q  156 atcagtccgttacactctgtattatcaacctcagcaggcttcta 199  Q
    |||||||||  |||  ||||||||||||||||||||||||||||    
T  21633633 atcagtccggaaca-actgtattatcaacctcagcaggcttcta 21633591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 67 - 188
Target Start/End: Complemental strand, 30676931 - 30676810
Alignment:
Q  67 cagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactataatatgttgatcacaccagatcagtccgtt 166  Q
    ||||||||||||| |||||||||||||||| || | ||| | ||||| |||||||| ||||||||||||||   | |||||||||| ||||||||| |||    
T  30676931 cagtccccacacttcgtgtgagattatccattacaatattcagctataagaaacttatgaatagcactatatgttcttgatcacacaagatcagtctgtt 30676832  T
Q  167 acactctgtattatcaacctca 188  Q
    ||||||||||||||||| ||||    
T  30676831 acactctgtattatcaatctca 30676810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 65 - 207
Target Start/End: Original strand, 40999078 - 40999221
Alignment:
Q  65 tccagtccccacactacgtgtgagattatccagtatagta-tcctgctatcagaaacttctgaatagcactataatatgttgatcacaccagatcagtcc 163  Q
    ||||||||||||||  |||||||||||||||| ||||||  || ||||| | ||||||| ||| |||||||||||  | |||||||||||||||||||      
T  40999078 tccagtccccacacctcgtgtgagattatccactatagttgtcttgctaacggaaacttatgactagcactataaggttttgatcacaccagatcagttt 40999177  T
Q  164 gttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
    |||||||  |||||||||||||||| ||| ||||||| ||||||    
T  40999178 gttacaccatgtattatcaacctcaacagacttctacaattctt 40999221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 38 - 207
Target Start/End: Original strand, 3470952 - 3471121
Alignment:
Q  38 ttatcctggttcgcctaacc-ggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactat 136  Q
    |||||||||||| || |||| || ||| ||||| ||||||||| | |||||||||||||| | |||||| |   |   |||||||||| |  | || |||    
T  3470952 ttatcctggttcaccaaacccggttacttccagcccccacacttcatgtgagattatccactgtagtatacaattggtagaaacttctaaccaacattat 3471051  T
Q  137 aatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
    ||  | ||||||||||||||||||||||| || | ||||||||||||||||||||||||||||| ||||||    
T  3471052 aaggtcttgatcacaccagatcagtccgtaac-cactgtattatcaacctcagcaggcttctacaattctt 3471121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 56 - 163
Target Start/End: Original strand, 21919465 - 21919572
Alignment:
Q  56 ccggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactataatatgttgatcacaccag 155  Q
    |||||||| ||||||||||||||| |||||||||||||||| |||||| | | | |   |||||||||| |  | ||||||||  | |||||||||||||    
T  21919465 ccggctacttccagtccccacacttcgtgtgagattatccactatagttttcagttggtagaaacttctaaccaacactataaggtcttgatcacaccag 21919564  T
Q  156 atcagtcc 163  Q
    ||||||||    
T  21919565 atcagtcc 21919572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 254
Target Start/End: Original strand, 14272234 - 14272262
Alignment:
Q  226 ctatctcaaactattaagcccaatagact 254  Q
    |||||||||||||||||||||||||||||    
T  14272234 ctatctcaaactattaagcccaatagact 14272262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 254
Target Start/End: Original strand, 14282100 - 14282128
Alignment:
Q  226 ctatctcaaactattaagcccaatagact 254  Q
    |||||||||||||||||||||||||||||    
T  14282100 ctatctcaaactattaagcccaatagact 14282128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 254
Target Start/End: Original strand, 21919580 - 21919608
Alignment:
Q  226 ctatctcaaactattaagcccaatagact 254  Q
    |||||||||||||||||||||||||||||    
T  21919580 ctatctcaaactattaagcccaatagact 21919608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 9e-45; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 25 - 254
Target Start/End: Original strand, 31575414 - 31575651
Alignment:
Q  25 aacacaagagaatttatcctggttcgcctaa-ccggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttc 123  Q
    ||||||||||| || |||||||||| || || |||||||| ||||||||||||||| |||||||||||||||| |||||||| | ||||  |||||||||    
T  31575414 aacacaagagagtt-atcctggttcaccaaatccggctacttccagtccccacacttcgtgtgagattatccactatagtattcagctagtagaaacttc 31575512  T
Q  124 tgaatagcactataatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattcttgatcacacaagaaaag 223  Q
    | | |||||||||||  | |||||||||||| ||||||||   || | |||||||||||||||||||| |||||||| |||||||||||||||||||| |    
T  31575513 taactagcactataaggtcttgatcacaccaaatcagtccagaac-ccctgtattatcaacctcagcaagcttctacaattcttgatcacacaagaaagg 31575611  T
Q  224 ---------ttctatctcaaactattaagcccaatagact 254  Q
             |||||||||||||||||||||||||||||||    
T  31575612 ttggaactcttctatctcaaactattaagcccaatagact 31575651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 38 - 207
Target Start/End: Complemental strand, 20714242 - 20714072
Alignment:
Q  38 ttatcctggttcgcctaacc-ggctacgtccagtccccacactacgtgtgagattatccagtatagta-tcctgctatcagaaacttctgaatagcacta 135  Q
    |||||||||||| || |||| |||||| ||||||||||||||  ||||||| |||||||| ||||||  || ||||| ||||||||||||| ||||||||    
T  20714242 ttatcctggttcaccaaacccggctacttccagtccccacacctcgtgtgacattatccattatagttgtcttgctaacagaaacttctgactagcacta 20714143  T
Q  136 taatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
    ||| || |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||    
T  20714142 taagatcttgatcacaccagatcagtctgttacac-ctgtattatcaacctcagcaggcttctacaattctt 20714072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 56 - 207
Target Start/End: Original strand, 7789112 - 7789263
Alignment:
Q  56 ccggctacgtccagtccccacactacgtgtgagattatccagtatagta-tcctgctatcagaaacttctgaatagcactataatatgttgatcacacca 154  Q
    |||||||| ||||||||||||||  |||||||||||||||| ||||||  || ||||| ||||||||||||| |||||||| ||| | ||||||||||||    
T  7789112 ccggctacttccagtccccacacctcgtgtgagattatccactatagttgtcttgctaacagaaacttctgactagcactacaatttcttgatcacacca 7789211  T
Q  155 gatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
    |||||||| || || ||||||||||||||||||||||||||| ||| ||||||    
T  7789212 gatcagtctgtaac-ctctgtattatcaacctcagcaggcttatacaattctt 7789263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 38 - 207
Target Start/End: Original strand, 42712193 - 42712362
Alignment:
Q  38 ttatcctggttcgcctaacc-ggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactat 136  Q
    |||||||||||| || |||| |||||| ||||||||||||||| |||||||||||||||| |||||||| | | |   |||||||||| |  | ||||||    
T  42712193 ttatcctggttcaccaaacccggctacttccagtccccacacttcgtgtgagattatccactatagtatgcagttggtagaaacttctaaccaacactat 42712292  T
Q  137 aatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
    ||  | ||||||||||||||||||||||| || | ||||||||||||||||||||||||||||| ||||||    
T  42712293 aaggtcttgatcacaccagatcagtccgtaac-cactgtattatcaacctcagcaggcttctacaattctt 42712362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 38 - 207
Target Start/End: Complemental strand, 20044990 - 20044821
Alignment:
Q  38 ttatcctggttcgcctaacc-ggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactat 136  Q
    |||||||||||| || |||| |||||| ||||||||||||||| ||||||||||||||||  ||||||| | | |   |||||||||| |  | ||||||    
T  20044990 ttatcctggttcaccaaacccggctacatccagtccccacacttcgtgtgagattatccacgatagtatacagttggtagaaacttctaaccaacactat 20044891  T
Q  137 aatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
    ||  | ||||||||||||||||||||||| || | ||||||||||||||||||||||||||||| ||||||    
T  20044890 aaggtcttgatcacaccagatcagtccgtaac-ccctgtattatcaacctcagcaggcttctacaattctt 20044821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 58 - 198
Target Start/End: Original strand, 25051099 - 25051238
Alignment:
Q  58 ggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactataatatgttgatcacaccagat 157  Q
    |||||| ||||||||||||||| |||||||||||||||| |||||||| | | |   |||||||||| |  | ||||||||| | |||||||||||||||    
T  25051099 ggctacttccagtccccacacttcgtgtgagattatccactatagtattcagttggtagaaacttctaaccaacactataatgtcttgatcacaccagat 25051198  T
Q  158 cagtccgttacactctgtattatcaacctcagcaggcttct 198  Q
    ||||| || || |||||||||||||||||||||||||||||    
T  25051199 cagtctgtaac-ctctgtattatcaacctcagcaggcttct 25051238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 60 - 207
Target Start/End: Complemental strand, 12925503 - 12925357
Alignment:
Q  60 ctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactataatatgttgatcacaccagatca 159  Q
    |||| ||||||||||||||| |||||||||||||||| |||||||| | | |   |||||||||| |  | ||||||||  | |||||||||||||||||    
T  12925503 ctacttccagtccccacacttcgtgtgagattatccactatagtatgcagttggtagaaacttctaaccaacactataaggtcttgatcacaccagatca 12925404  T
Q  160 gtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
    |||||| || | ||||||||||||||||||||||||||||| ||||||    
T  12925403 gtccgtaac-cactgtattatcaacctcagcaggcttctacaattctt 12925357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 25 - 207
Target Start/End: Complemental strand, 15834135 - 15833953
Alignment:
Q  25 aacacaagagaatttatcctggttcgcctaa-ccggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttc 123  Q
    ||||||||||| |||||| |||||| || || |||||||| | |||||| |||||  |||||||||||||||| ||||||||| ||||| | ||||||||    
T  15834135 aacacaagaga-tttatcttggttcaccaaatccggctactttcagtccacacacctcgtgtgagattatccattatagtatcatgctaactgaaacttc 15834037  T
Q  124 tgaatagcactataatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
    ||| |||||||||||  | |||| || ||||||| ||| |||||| | ||||||||||||| |||| ||| |||||| ||||||    
T  15834036 tgactagcactataagttcttgaccataccagataagttcgttactccctgtattatcaacatcagtaggtttctacaattctt 15833953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 25 - 207
Target Start/End: Complemental strand, 20030363 - 20030182
Alignment:
Q  25 aacacaagagaatttatcctggttcgcctaacc-ggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttc 123  Q
    ||||||||||| || |||||||||| || |||| |||||| ||||||||||||||| |||||||||||||||| |||||||| | | |   | |||||||    
T  20030363 aacacaagagagtt-atcctggttcaccaaacccggctacttccagtccccacacttcgtgtgagattatccactatagtatacagttggtataaacttc 20030265  T
Q  124 tgaatagcactataatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
    | |  | ||||||||  | |||||||||||||||||||||| ||  | ||||||||||||||||||||||||||||| ||||||    
T  20030264 taaccaacactataaggtcttgatcacaccagatcagtccg-taatccctgtattatcaacctcagcaggcttctacaattctt 20030182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 38 - 198
Target Start/End: Original strand, 18883175 - 18883335
Alignment:
Q  38 ttatcctggttcgcctaa-ccggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactat 136  Q
    |||||||||||| || || |||||||| ||||||||||||||| |||||||||||||||| |||||||| | | |   ||||| |||| |  | ||||||    
T  18883175 ttatcctggttcaccaaatccggctacttccagtccccacacttcgtgtgagattatccactatagtattcagttggtagaaaattctaaccaacactat 18883274  T
Q  137 aatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttct 198  Q
    ||  | ||||||||||||||||||| || ||| |||||||||||||||||||||||||||||    
T  18883275 aaagtcttgatcacaccagatcagttcg-taccctctgtattatcaacctcagcaggcttct 18883335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 58 - 198
Target Start/End: Original strand, 25037062 - 25037201
Alignment:
Q  58 ggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactataatatgttgatcacaccagat 157  Q
    |||||| ||||||||||||||| |||||||||||||||| |||||||| | | |   |||||||||| |  | ||||||||  | |||||||||||||||    
T  25037062 ggctacttccagtccccacacttcgtgtgagattatccactatagtattcagttggtagaaacttctaaccaacactataaagtcttgatcacaccagat 25037161  T
Q  158 cagtccgttacactctgtattatcaacctcagcaggcttct 198  Q
    ||||| || || |||||||||||||||||||||||||||||    
T  25037162 cagtctgtaac-ctctgtattatcaacctcagcaggcttct 25037201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 67 - 207
Target Start/End: Complemental strand, 12767773 - 12767634
Alignment:
Q  67 cagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactataatatgttgatcacaccagatcagtccgtt 166  Q
    ||||||||||| | |||||||||||||||| |||||||| | | |   |||||||||| |  | ||||||||  | |||||||||||||||||||||||     
T  12767773 cagtccccacatttcgtgtgagattatccactatagtattcagttggtagaaacttctaaccaacactataaggtcttgatcacaccagatcagtccgta 12767674  T
Q  167 acactctgtattatcaacctcagcaggcttctacgattctt 207  Q
    || | ||||||||||||||||||||||||||||| ||||||    
T  12767673 accc-ctgtattatcaacctcagcaggcttctacaattctt 12767634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 56 - 198
Target Start/End: Complemental strand, 18251982 - 18251841
Alignment:
Q  56 ccggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactataatatgttgatcacaccag 155  Q
    |||||||| ||||||||||||||| |||||||||||||||| |||||||| | | |  ||||||||||| |  | ||||||||  | ||||||||||| |    
T  18251982 ccggctacttccagtccccacacttcgtgtgagattatccactatagtattcagttggcagaaacttctaaccaacactataacgtcttgatcacacccg 18251883  T
Q  156 atcagtccgttacactctgtattatcaacctcagcaggcttct 198  Q
    ||||||  || || |||||||||||||||||||||||| ||||    
T  18251882 atcagtttgtaac-ctctgtattatcaacctcagcaggattct 18251841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 38 - 198
Target Start/End: Complemental strand, 18233099 - 18232939
Alignment:
Q  38 ttatcctggttcgcctaa-ccggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactat 136  Q
    |||||||||||| || || |||||||| ||||||||||||||| |||||||||||||||| |||||||| | | |  ||||||||||| |  | |||||     
T  18233099 ttatcctggttcaccaaatccggctacttccagtccccacacttcgtgtgagattatccactatagtattcagttggcagaaacttctaatcaacactac 18233000  T
Q  137 aatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttct 198  Q
    ||  | ||||||||||| |||||||  || || |||||||||||||||||||||||| ||||    
T  18232999 aacgtcttgatcacacccgatcagtttgtaac-ctctgtattatcaacctcagcaggattct 18232939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 38 - 198
Target Start/End: Complemental strand, 18242550 - 18242390
Alignment:
Q  38 ttatcctggttcgcctaa-ccggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactat 136  Q
    |||||||||||| || || |||||||| ||||||||||||||| |||||||||||||||| |||||||| | | |  ||||||||||| |  | |||||     
T  18242550 ttatcctggttcaccaaatccggctacttccagtccccacacttcgtgtgagattatccactatagtattcagttggcagaaacttctaatcaacactac 18242451  T
Q  137 aatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttct 198  Q
    ||  | ||||||||||| |||||||  || || |||||||||||||||||||||||| ||||    
T  18242450 aacgtcttgatcacacccgatcagtttgtaac-ctctgtattatcaacctcagcaggattct 18242390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 60 - 163
Target Start/End: Complemental strand, 24634117 - 24634014
Alignment:
Q  60 ctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactataatatgttgatcacaccagatca 159  Q
    |||| ||||||||||||||| ||||||| |||||||| |||||||| | ||||  |||||||||| | |||||||||||  | |||||||||||||||||    
T  24634117 ctacttccagtccccacacttcgtgtgatattatccactatagtattcagctagtagaaacttctaactagcactataaggtcttgatcacaccagatca 24634018  T
Q  160 gtcc 163  Q
    ||||    
T  24634017 gtcc 24634014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 165
Target Start/End: Complemental strand, 12915631 - 12915503
Alignment:
Q  38 ttatcctggttcgcctaacc-ggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactat 136  Q
    |||||||||||| || |||| |||||| ||||||||||||||| |||||||||||||||| |||||||| | | |   |||||||||| |  | ||||||    
T  12915631 ttatcctggttcaccaaacccggctacttccagtccccacacttcgtgtgagattatccactatagtatgcagttggtagaaacttctaaccaacactat 12915532  T
Q  137 aatatgttgatcacaccagatcagtccgt 165  Q
    ||  | |||||||||||||||||||||||    
T  12915531 aaggtcttgatcacaccagatcagtccgt 12915503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 56 - 198
Target Start/End: Original strand, 18143463 - 18143604
Alignment:
Q  56 ccggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactataatatgttgatcacaccag 155  Q
    |||||||| ||||||||||||||| |||||||||||||||| ||||| || | | |   | |||||||| |  | ||||||||  | |||||||||||||    
T  18143463 ccggctacttccagtccccacacttcgtgtgagattatccactatagcattcagttggtaaaaacttctaaccaacactataaggtcttgatcacaccag 18143562  T
Q  156 atcagtccgttacactctgtattatcaacctcagcaggcttct 198  Q
    ||||||| || || || ||||||||||||||||| ||||||||    
T  18143563 atcagtctgtaaccct-tgtattatcaacctcagtaggcttct 18143604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 38 - 163
Target Start/End: Original strand, 33592149 - 33592275
Alignment:
Q  38 ttatcctggttcgcctaa-ccggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactat 136  Q
    |||||||||||| || || |||||||| ||||||||||||||| |||||||||||||||| |||||| | | | |  |||||||||||||  | ||||||    
T  33592149 ttatcctggttcacccaatccggctacttccagtccccacacttcgtgtgagattatccactatagttttcagttgacagaaacttctgaccaacactat 33592248  T
Q  137 aatatgttgatcacaccagatcagtcc 163  Q
    ||  | |||||||||| ||||||||||    
T  33592249 aaggtcttgatcacactagatcagtcc 33592275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 38 - 163
Target Start/End: Original strand, 33601788 - 33601914
Alignment:
Q  38 ttatcctggttcgcctaa-ccggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactat 136  Q
    |||||||||||| || || |||||||| ||||||||||||||| |||||||||||||||| |||||| | | | |  |||||||||||||  | ||||||    
T  33601788 ttatcctggttcacccaatccggctacttccagtccccacacttcgtgtgagattatccactatagttttcagttgacagaaacttctgaccaacactat 33601887  T
Q  137 aatatgttgatcacaccagatcagtcc 163  Q
    ||  | |||||||||| ||||||||||    
T  33601888 aaggtcttgatcacactagatcagtcc 33601914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 56 - 198
Target Start/End: Original strand, 4843756 - 4843899
Alignment:
Q  56 ccggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactataatatgttgatcacaccag 155  Q
    |||||||| ||||||||||||||| |||||||||||||||| |||||||| | | |   ||||| |||| |  |  |||||||  | |||||||||||||    
T  4843756 ccggctacttccagtccccacacttcgtgtgagattatccactatagtattcagttggtagaaatttctaaccaagactataaggtcttgatcacaccag 4843855  T
Q  156 atcagtccgttacac-tctgtattatcaacctcagcaggcttct 198  Q
    ||||||| || || | | | |||||||||||||| |||||||||    
T  4843856 atcagtctgtaacccttgtatattatcaacctcatcaggcttct 4843899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 36 - 188
Target Start/End: Original strand, 24096088 - 24096241
Alignment:
Q  36 atttatcctggttcgcctaac-cggctacgtccagtcccc-acactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcac 133  Q
    |||||| ||||||| || ||| || |||| |||||||||| ||||  |||||||||||||||| ||||||||| ||||| || |||||| ||| ||||||    
T  24096088 atttattctggttcaccaaactcgactacttccagtcccccacacctcgtgtgagattatccactatagtatcttgctaacataaacttttgactagcac 24096187  T
Q  134 tataatatgttgatcacaccagatcagtccgttacactctgtattatcaacctca 188  Q
    || ||  | ||||| |||||| |||||||| ||   || ||||||||||||||||    
T  24096188 tacaagttcttgattacaccatatcagtccattttcct-tgtattatcaacctca 24096241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 163
Target Start/End: Original strand, 42896183 - 42896290
Alignment:
Q  56 ccggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactataatatgttgatcacaccag 155  Q
    |||||||| ||||||| ||||||| |||||||||||||||| |||||  | | | |   |||||||||| |  | ||||||||  | |||||||||||||    
T  42896183 ccggctacttccagtctccacacttcgtgtgagattatccactatagatttcagttgatagaaacttctaaccaacactataaggtcttgatcacaccag 42896282  T
Q  156 atcagtcc 163  Q
    ||||||||    
T  42896283 atcagtcc 42896290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 224 - 254
Target Start/End: Original strand, 18143642 - 18143672
Alignment:
Q  224 ttctatctcaaactattaagcccaatagact 254  Q
    |||||||||||||||||||||||||||||||    
T  18143642 ttctatctcaaactattaagcccaatagact 18143672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 207
Target Start/End: Original strand, 21372727 - 21372824
Alignment:
Q  110 ctatcagaaacttctgaatagcactataatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
    ||||||||| ||| ||| |||||||||| | | || |||||| || |||||||  ||||||| | |||||||||||| || |||||| ||| ||||||    
T  21372727 ctatcagaagcttatgagtagcactatattttcttaatcacatcaaatcagtctcttacactgtatattatcaaccttagaaggcttttacaattctt 21372824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 254
Target Start/End: Complemental strand, 12925325 - 12925297
Alignment:
Q  226 ctatctcaaactattaagcccaatagact 254  Q
    |||||||||||||||||||||||||||||    
T  12925325 ctatctcaaactattaagcccaatagact 12925297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 254
Target Start/End: Complemental strand, 20044789 - 20044761
Alignment:
Q  226 ctatctcaaactattaagcccaatagact 254  Q
    |||||||||||||||||||||||||||||    
T  20044789 ctatctcaaactattaagcccaatagact 20044761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 254
Target Start/End: Original strand, 42712394 - 42712422
Alignment:
Q  226 ctatctcaaactattaagcccaatagact 254  Q
    |||||||||||||||||||||||||||||    
T  42712394 ctatctcaaactattaagcccaatagact 42712422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 11 - 254
Target Start/End: Original strand, 4306547 - 4306798
Alignment:
Q  11 gagagatgaaagagaacacaagagaatttatcctggttcgcctaa-ccggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctg 109  Q
    |||||| ||||||  |||||| ||| |||||||| |||| || || || ||||| |||||| |||||||| || |||||||| || | ||||||||||      
T  4306547 gagagaagaaagatcacacaaaaga-tttatcctagttcaccaaagccagctacttccagttcccacacttcgagtgagattttctactatagtatccaa 4306645  T
Q  110 ctatcagaaacttctgaatagcactataatatgttgatcacaccagatcagtccg-ttacactctgtattatcaacctcagcaggcttctacgattcttg 208  Q
    ||||||||||||| |||||||||||||  |  ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||| |||    
T  4306646 ctatcagaaacttatgaatagcactatgtt--gttgatcacaccagatcagtccgattacactctgtattatcaacctcagcagacttctacaattattg 4306743  T
Q  209 atcacacaagaaaagt---------tctatctcaaactattaagcccaatagact 254  Q
    ||||||||||||| ||         ||||| ||||||||||||||||||||||||    
T  4306744 atcacacaagaaaggttggaacaactctatatcaaactattaagcccaatagact 4306798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 25 - 207
Target Start/End: Complemental strand, 7593191 - 7593009
Alignment:
Q  25 aacacaagagaatttatcctggttcgcctaacc-ggctacgtccagtccccacactacgtgtgagattatccagtatagtatcct-gctatcagaaactt 122  Q
    ||||||||||| || |||||||||| || |||| |||||| ||||||||||||||  |||||||||||||||| |||||| | || |||| |||||||||    
T  7593191 aacacaagagagtt-atcctggttcaccaaacctggctacttccagtccccacacctcgtgtgagattatccattatagttttcttgctaacagaaactt 7593093  T
Q  123 ctgaatagcactataatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
    |||| |||||||| ||||| ||||||||||||||||||||||| |||| ||||||||||||||||| ||||||| ||| ||||||    
T  7593092 ctgactagcactacaatatcttgatcacaccagatcagtccgtaacac-ctgtattatcaacctcatcaggcttatacaattctt 7593009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 36 - 196
Target Start/End: Complemental strand, 15174715 - 15174554
Alignment:
Q  36 atttatcctggttcgcctaacc-ggctacgtccagtccccacactacgtgtgagattatccagtatagtatcct-gctatcagaaacttctgaatagcac 133  Q
    |||||||||||||| || |||| |||||| ||||||||||||||  |||||||||||||||| |||||| | || |||| || |||||||||| ||||||    
T  15174715 atttatcctggttcaccaaacccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacaaaaacttctgactagcac 15174616  T
Q  134 tataatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggctt 196  Q
    || || || |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  15174615 tacaagatcttgatcacaccagatcagtccgttacac-ctgtattatcaacctcagcaggctt 15174554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 38 - 207
Target Start/End: Original strand, 14634793 - 14634962
Alignment:
Q  38 ttatcctggttcgcctaacc-ggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactat 136  Q
    |||||||||||| || |||| |||||| ||||||||||||||| |||||||||||||||| |||||||| | |||   |||||||||| |  | ||||||    
T  14634793 ttatcctggttcaccaaacccggctacttccagtccccacacttcgtgtgagattatccactatagtatgcagctggtagaaacttctaaccaacactat 14634892  T
Q  137 aatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
    ||  | ||||||||||||||||||||||| || | ||||||||||||||||||||||||||||| ||||||    
T  14634893 aaggtcttgatcacaccagatcagtccgtaac-cactgtattatcaacctcagcaggcttctacaattctt 14634962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 143 - 254
Target Start/End: Complemental strand, 14777479 - 14777368
Alignment:
Q  143 ttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattcttgatcacacaagaaaagttctatctcaaactattaa 242  Q
    |||||||| |||||||||||  ||||||  |||||| | ||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  14777479 ttgatcacgccagatcagtctattacaccatgtattgttaaccttagcaggtttctacaattcttgatcacacaagaaaagttctatctcaaactattaa 14777380  T
Q  243 gcccaatagact 254  Q
    ||||||||||||    
T  14777379 gcccaatagact 14777368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 57 - 200
Target Start/End: Original strand, 19352624 - 19352767
Alignment:
Q  57 cggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactataatatgttgatcacaccaga 156  Q
    ||||||| |||||||| |||||| |||||||||||||||| |||||| |||||||| ||||||||||||| | | |||||||  |  |||||||||||||    
T  19352624 cggctacttccagtcctcacacttcgtgtgagattatccactatagtctcctgctaacagaaacttctgacttgtactataaattcctgatcacaccaga 19352723  T
Q  157 tcagtccgttacactctgtattatcaacctcagcaggcttctac 200  Q
    ||  |||||||||| ||||||||| ||||||| |||||||||||    
T  19352724 tctttccgttacaccctgtattatgaacctcatcaggcttctac 19352767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 38 - 207
Target Start/End: Original strand, 14644493 - 14644662
Alignment:
Q  38 ttatcctggttcgcctaacc-ggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactat 136  Q
    |||||||||||| || |||| |||||| ||||||||||||||| |||||||||||||||| |||||||| | | |   |||||||||| |  | ||||||    
T  14644493 ttatcctggttcaccaaacccggctacttccagtccccacacttcgtgtgagattatccactatagtatgcagttggtagaaacttctaaccaacactat 14644592  T
Q  137 aatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
    ||  | ||||||||||||||||||||||| || | ||||||||||||||||||||||||||||| ||||||    
T  14644593 aaggtcttgatcacaccagatcagtccgtaac-cactgtattatcaacctcagcaggcttctacaattctt 14644662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 38 - 207
Target Start/End: Original strand, 33292192 - 33292361
Alignment:
Q  38 ttatcctggttcgcctaacc-ggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactat 136  Q
    |||||||||||| || |||| |||||| ||||||||||||||| |||||||||||||||| |||||||| | | |   |||||||||| |  | ||||||    
T  33292192 ttatcctggttcaccaaacccggctacttccagtccccacacttcgtgtgagattatccactatagtatgcagttggtagaaacttctaaccaacactat 33292291  T
Q  137 aatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
    ||  | ||||||||||||||||||||||| || | ||||||||||||||||||||||||||||| ||||||    
T  33292292 aaggtcttgatcacaccagatcagtccgtaac-cactgtattatcaacctcagcaggcttctacaattctt 33292361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 38 - 207
Target Start/End: Original strand, 15947388 - 15947557
Alignment:
Q  38 ttatcctggttcgcctaacc-ggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactat 136  Q
    |||||||||||| || |||| |||||| ||||||| ||||||| |||||||||||||||| |||||||| | | |   |||||||||| |  | ||||||    
T  15947388 ttatcctggttcaccaaacccggctacttccagtcaccacacttcgtgtgagattatccactatagtatgcagttggtagaaacttctaaccaacactat 15947487  T
Q  137 aatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
    ||  | ||||||||||||||||||||||| || | ||||||||||||||||||||||||||||| ||||||    
T  15947488 aaggtcttgatcacaccagatcagtccgtaac-cactgtattatcaacctcagcaggcttctacaattctt 15947557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 143 - 254
Target Start/End: Complemental strand, 15229617 - 15229506
Alignment:
Q  143 ttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattcttgatcacacaagaaaagttctatctcaaactattaa 242  Q
    |||||||| |||||||||||  ||||||  |||||| | ||||| | |||  |||||| |||||||||||||||||||||||||||||||||||||||||    
T  15229617 ttgatcacgccagatcagtctattacaccatgtattgttaacctaaacagatttctacaattcttgatcacacaagaaaagttctatctcaaactattaa 15229518  T
Q  243 gcccaatagact 254  Q
    ||||||||||||    
T  15229517 gcccaatagact 15229506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 38 - 198
Target Start/End: Original strand, 11634345 - 11634505
Alignment:
Q  38 ttatcctggttcgcctaa-ccggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactat 136  Q
    |||||||||||| || || |||||||| ||||||||||||||| |||||||||||||||| |||||||| | | |  ||||||||||| |  | ||||||    
T  11634345 ttatcctggttcaccaaatccggctacttccagtccccacacttcgtgtgagattatccactatagtattcagttggcagaaacttctaaccaacactat 11634444  T
Q  137 aatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttct 198  Q
    ||  | ||||||||||| |||||||  || || |||||||||||||||||||||||||||||    
T  11634445 aacgtcttgatcacacccgatcagtttgtaac-ctctgtattatcaacctcagcaggcttct 11634505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 56 - 207
Target Start/End: Complemental strand, 9737099 - 9736949
Alignment:
Q  56 ccggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactataatatgttgatcacaccag 155  Q
    |||||||| ||||||||||||||| |||||||||||||||| |||||||| | | |   |||||||||| |  | ||||||||    |||||||||||||    
T  9737099 ccggctacttccagtccccacacttcgtgtgagattatccattatagtattcagtttgtagaaacttctaaccaacactataaggccttgatcacaccag 9737000  T
Q  156 atcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
    ||||||| | ||  | ||||||||||||||||||||||||||||| ||||||    
T  9736999 atcagtctg-tagcccctgtattatcaacctcagcaggcttctacaattctt 9736949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 38 - 200
Target Start/End: Complemental strand, 32818168 - 32818006
Alignment:
Q  38 ttatcctggttcgcctaacc-ggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactat 136  Q
    |||||||||||| || |||| |||||| ||| ||||||||||| |||||||||||||||| |||||||| | | |   |||||||||| |  | ||||||    
T  32818168 ttatcctggttcaccaaacccggctacttccggtccccacacttcgtgtgagattatccactatagtattcagttggtagaaacttctaaccaacactat 32818069  T
Q  137 aatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctac 200  Q
    ||  | |||||||||||||||||||| || || | |||||||||||||||| ||||||||||||    
T  32818068 aaggtcttgatcacaccagatcagtctgtaac-ccctgtattatcaacctccgcaggcttctac 32818006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 38 - 163
Target Start/End: Complemental strand, 13874557 - 13874432
Alignment:
Q  38 ttatcctggttcgcctaaccggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactata 137  Q
    |||||||||||| || || | ||||| ||||||||||||||| |||||||||||||||| |||||| | | | |   |||||||||| |  | |||||||    
T  13874557 ttatcctggttcacccaatccgctacttccagtccccacacttcgtgtgagattatccactatagttttcagttggtagaaacttctaaccaacactata 13874458  T
Q  138 atatgttgatcacaccagatcagtcc 163  Q
    |  | |||||||||||||||||||||    
T  13874457 aggtcttgatcacaccagatcagtcc 13874432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 138
Target Start/End: Original strand, 48710057 - 48710124
Alignment:
Q  71 ccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactataa 138  Q
    ||||||||| |||||||||||||||| |||||||| | ||||  |||||||||| | |||||||||||    
T  48710057 ccccacacttcgtgtgagattatccactatagtattcagctagtagaaacttctaactagcactataa 48710124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 254
Target Start/End: Complemental strand, 9736917 - 9736889
Alignment:
Q  226 ctatctcaaactattaagcccaatagact 254  Q
    |||||||||||||||||||||||||||||    
T  9736917 ctatctcaaactattaagcccaatagact 9736889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 254
Target Start/End: Original strand, 14634994 - 14635022
Alignment:
Q  226 ctatctcaaactattaagcccaatagact 254  Q
    |||||||||||||||||||||||||||||    
T  14634994 ctatctcaaactattaagcccaatagact 14635022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 254
Target Start/End: Original strand, 14644694 - 14644722
Alignment:
Q  226 ctatctcaaactattaagcccaatagact 254  Q
    |||||||||||||||||||||||||||||    
T  14644694 ctatctcaaactattaagcccaatagact 14644722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 254
Target Start/End: Complemental strand, 28344177 - 28344149
Alignment:
Q  226 ctatctcaaactattaagcccaatagact 254  Q
    |||||||||||||||||||||||||||||    
T  28344177 ctatctcaaactattaagcccaatagact 28344149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 56 - 207
Target Start/End: Original strand, 94465 - 94616
Alignment:
Q  56 ccggctacgtccagtccccacactacgtgtgagattatccagtatagtatcct-gctatcagaaacttctgaatagcactataatatgttgatcacacca 154  Q
    |||||||| ||||||||||||||  |||||||||||||||| |||||| | || |||| ||||||||||||| |||||||| ||| | ||||||||||||    
T  94465 ccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaacttctgactagcactacaatttcttgatcacacca 94564  T
Q  155 gatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
    ||||||||||| || ||||||||||||||||||||||||||| ||| ||||||    
T  94565 gatcagtccgtaac-ctctgtattatcaacctcagcaggcttatacaattctt 94616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 38 - 207
Target Start/End: Original strand, 103887 - 104057
Alignment:
Q  38 ttatcctggttcgcctaacc-ggctacgtccagtccccacactacgtgtgagattatccagtatagtatcct-gctatcagaaacttctgaatagcacta 135  Q
    |||||||||||| || |||| |||||  ||||||||||||||  |||||||||||||||| |||||| | || |||| ||||||||||||| ||||||||    
T  103887 ttatcctggttcaccaaacccggctaattccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaacttctgactagcacta 103986  T
Q  136 taatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
     ||| | ||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||| ||||||    
T  103987 caatttcttgatcacaccagatcagtccgtaac-ctctgtattatcaacctcagcaggcttatacaattctt 104057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 38 - 207
Target Start/End: Original strand, 30838 - 31008
Alignment:
Q  38 ttatcctggttcgcctaacc-ggctacgtccagtccccacactacgtgtgagattatccagtatagtatcct-gctatcagaaacttctgaatagcacta 135  Q
    |||||||||||| || |||| |||||| ||||||||||||||  |||||||||||||||| |||||| | || |||| ||||||||||||| || |||||    
T  30838 ttatcctggttcaccaaacccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaacttctgactaacacta 30937  T
Q  136 taatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
     ||||| |||||||||||||||||||| || |||| ||||||||||||||||||||||||| ||| ||||||    
T  30938 caatattttgatcacaccagatcagtcagtaacac-ctgtattatcaacctcagcaggcttatacaattctt 31008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 65 - 207
Target Start/End: Complemental strand, 10187 - 10045
Alignment:
Q  65 tccagtccccacactacgtgtgagattatccagtatagta-tcctgctatcagaaacttctgaatagcactataatatgttgatcacaccagatcagtcc 163  Q
    ||||||||||||||  |||||||||||||||| ||||||  || ||||| ||||||||||||| |||||||||||  | | ||||||||||||||||||     
T  10187 tccagtccccacaccccgtgtgagattatccactatagttgtcttgctaacagaaacttctgactagcactataaggtctagatcacaccagatcagtct 10088  T
Q  164 gttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
    ||||||| |||||||||||||||||  |||||||||| ||||||    
T  10087 gttacac-ctgtattatcaacctcaataggcttctacaattctt 10045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0482 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 56 - 207
Target Start/End: Complemental strand, 3687 - 3536
Alignment:
Q  56 ccggctacgtccagtccccacactacgtgtgagattatccagtatagta-tcctgctatcagaaacttctgaatagcactataatatgttgatcacacca 154  Q
    |||||||| ||||||||||||||  |||||||||||||||| ||||||  || ||||| ||||||||||||| |||||||| ||| | ||||||||||||    
T  3687 ccggctacttccagtccccacacctcgtgtgagattatccactatagttgtcttgctaacagaaacttctgactagcactacaatttcttgatcacacca 3588  T
Q  155 gatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
    |||||||| || || ||||||||||||||||||||||||||| ||| ||||||    
T  3587 gatcagtctgtaac-ctctgtattatcaacctcagcaggcttatacaattctt 3536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 38 - 207
Target Start/End: Complemental strand, 408501 - 408331
Alignment:
Q  38 ttatcctggttcgcctaaccgg-ctacgtccagtccccacactacgtgtgagattatccagtatagtatcct-gctatcagaaacttctgaatagcacta 135  Q
    |||||||||||| || |||| | |||| ||||||||||||||  |||||||||||||||| |||||| | || |||| ||||||||||||| ||||||||    
T  408501 ttatcctggttcaccaaacccgtctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaacttctgactagcacta 408402  T
Q  136 taatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
     ||||| ||||||||||||||| ||||||| |||| ||||||||||||||||  ||||||| ||| ||||||    
T  408401 caatatcttgatcacaccagattagtccgtaacac-ctgtattatcaacctcttcaggcttatacaattctt 408331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 57 - 196
Target Start/End: Original strand, 27088 - 27231
Alignment:
Q  57 cggctacgtccagtccccacactacgtgtgagattatccag----tatagtatcctgctatcagaaacttctgaatagcactataatatgttgatcacac 152  Q
    ||||||| ||||||||||| ||| ||||||||||||||||     ||||||||||  ||||||||||||||| |||| |||||||   | ||||||||||    
T  27088 cggctacttccagtccccatacttcgtgtgagattatccatccactatagtatccaactatcagaaacttcttaataacactatatgttcttgatcacac 27187  T
Q  153 cagatcagtccgttacactctgtattatcaacctcagcaggctt 196  Q
     |||||| | ||||||||||||||||||||||||||||||||||    
T  27188 tagatcaattcgttacactctgtattatcaacctcagcaggctt 27231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 25 - 207
Target Start/End: Complemental strand, 2293 - 2112
Alignment:
Q  25 aacacaagagaatttatcctggttcgcctaacc-ggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttc 123  Q
    ||||||||||| || |||||||||| || |||| |||||| ||||||||||||||| |||||||||||||||| |||||||| | | |   | |||||||    
T  2293 aacacaagagagtt-atcctggttcaccaaacccggctacttccagtccccacacttcgtgtgagattatccactatagtatacagttggtataaacttc 2195  T
Q  124 tgaatagcactataatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 207  Q
    | |  | ||||||||  | |||||||||||||||||||||| ||  | ||||||||||||||||||||||||||||| ||||||    
T  2194 taaccaacactataaggtcttgatcacaccagatcagtccg-taatccctgtattatcaacctcagcaggcttctacaattctt 2112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 38 - 198
Target Start/End: Complemental strand, 257130 - 256970
Alignment:
Q  38 ttatcctggttcgcctaa-ccggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactat 136  Q
    |||||||||||| || || |||||||| ||||||||||||||| ||||||| |||||||| |||||||| | | |   |||||||||| |  | ||||||    
T  257130 ttatcctggttcaccaaatccggctacttccagtccccacacttcgtgtgaaattatccactatagtattcagttggtagaaacttctaaccaacactat 257031  T
Q  137 aatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttct 198  Q
    ||  | ||||||||||||||||||| ||| || |||||||||||||||||||||| ||||||    
T  257030 aaagtcttgatcacaccagatcagttcgtaac-ctctgtattatcaacctcagcaagcttct 256970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 38 - 163
Target Start/End: Original strand, 2276 - 2402
Alignment:
Q  38 ttatcctggttcgcctaa-ccggctacgtccagtccccacactacgtgtgagattatccagtatagtatcctgctatcagaaacttctgaatagcactat 136  Q
    |||||||||||| || || |||||||| || |||||||||||| | |||||||||||||| |||||||| | | |   |||||||||| |  | ||||||    
T  2276 ttatcctggttcacccaatccggctacttctagtccccacacttcttgtgagattatccactatagtatacagttggtagaaacttctaaccaacactat 2375  T
Q  137 aatatgttgatcacaccagatcagtcc 163  Q
    ||  | |||||||||||||||||||||    
T  2376 aaggtcttgatcacaccagatcagtcc 2402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 254
Target Start/End: Original strand, 2410 - 2438
Alignment:
Q  226 ctatctcaaactattaagcccaatagact 254  Q
    |||||||||||||||||||||||||||||    
T  2410 ctatctcaaactattaagcccaatagact 2438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0334 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 38 - 103
Target Start/End: Original strand, 12563 - 12629
Alignment:
Q  38 ttatcctggttcgcctaa-ccggctacgtccagtccccacactacgtgtgagattatccagtatagt 103  Q
    |||||||||||| || || |||||||| ||||||||| ||||| |||||||||||||||| ||||||    
T  12563 ttatcctggttcacccaatccggctacttccagtccctacacttcgtgtgagattatccactatagt 12629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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