View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13866_low_3 (Length: 539)
Name: NF13866_low_3
Description: NF13866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13866_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 21 - 524
Target Start/End: Complemental strand, 56277787 - 56277275
Alignment:
| Q |
21 |
gatacttctgaatgcgtttcacccttaccaatttgaatttgaatttggaagggtcaaaatcaaaa------------gcaagagctatgctatcagtaat |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| || |
|
|
| T |
56277787 |
gatacttctgaatgcgtttcacccttaccaatttgaatttg------gaagggtcaaaatcaaaatcaaaatcaaaagcaagagctatgctatcagttat |
56277694 |
T |
|
| Q |
109 |
gtgacattgaggagggcagttgaattgaatccagtctttgtttgaaggattacagagatagatggttggatttggggaaggaaaacaggtacggcagcaa |
208 |
Q |
| |
|
|| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56277693 |
gtcacattgaggagggcagttgaattgaataaagtctttgtttgaaggattgcagagatagatggttggatttggggaaggaaaacaggtacggcagcaa |
56277594 |
T |
|
| Q |
209 |
agaattcctttacaagatgacaaaagcacaacatcttgaggaagaaaagaaaaaacattgtggtgaacaactagtttagcagcgtt---tttgggttgga |
305 |
Q |
| |
|
| |||||||||||| || | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
|
|
| T |
56277593 |
acaattcctttacaggaagccaaaacaacaacatcttgaggaagaaaagaaaaaacattgtggtgaacaactagtttagcagcgttgtttttgggttcca |
56277494 |
T |
|
| Q |
306 |
caggaatgtaactaatggttttaacatcgtgtttgcagaacatgtacctatcttgaacaataaaagcatttaaaacaagattagtgtttttgagttgatc |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
56277493 |
caggaatgtaactaatggttttaacatcgtgtttgcagaacatgtacctatcttgaacaataaaaccatttaaaacaagatttgtgtttttgagttgatc |
56277394 |
T |
|
| Q |
406 |
tttgatgaatgaacggcttgaaatgatgttgttccaccctctggaaatgcatttcatgctaagcaaaggcttggccggaacgcgtgtgagaatatgagag |
505 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
56277393 |
tttgatgaatgaacggcttgaaatgatgtggttccaacctctggaaatgcatttcatgctaagcaaaggtttggccggaacgcgtgtgagaatatgagag |
56277294 |
T |
|
| Q |
506 |
attacgtctctgttcagag |
524 |
Q |
| |
|
|| ||||||||||| |||| |
|
|
| T |
56277293 |
atgacgtctctgttgagag |
56277275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University