View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13866_low_30 (Length: 243)

Name: NF13866_low_30
Description: NF13866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13866_low_30
NF13866_low_30
[»] chr7 (1 HSPs)
chr7 (17-222)||(6488956-6489161)
[»] chr6 (3 HSPs)
chr6 (37-222)||(6328325-6328510)
chr6 (37-222)||(6335883-6336068)
chr6 (37-222)||(6350868-6351053)


Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 222
Target Start/End: Complemental strand, 6489161 - 6488956
Alignment:
Q  17 gagatgaaataaagaagagattaccgaagatggaggaagcgatctgctgacatcaacggtgtgaagaaaacctttgagattgcgatcacagccagcatta 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6489161 gagatgaaataaagaagagattaccgaagatggaggaagcgatctgctgacatcaacggtgtgaagaaaacctttgagattgcgatcacagccagcatta 6489062  T
Q  117 tcatgagcatcttcaacgccataaaccagcattccacgtaaaccggcttcattcaacccggcaatactttttccagcggtgatagcatcttctccagcac 216  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6489061 tcatgagcatcttcaacgccataaaccagcattccacgtaaacctgcttcattcaacccggcaatactttttccagcggtgatagcatcttctccggcac 6488962  T
Q  217 aaaaat 222  Q
    ||||||    
T  6488961 aaaaat 6488956  T

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Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 37 - 222
Target Start/End: Original strand, 6328325 - 6328510
Alignment:
Q  37 ttaccgaagatggaggaagcgatctgctgacatcaacggtgtgaagaaaacctttgagattgcgatcacagccagcattatcatgagcatcttcaacgcc 136  Q
    |||| ||||| |||||||| ||| |||| |||||||| || |||||||| ||||| ||||| |||||||| ||| |||| ||||| ||||||||||| ||    
T  6328325 ttacagaagaaggaggaagtgatttgctaacatcaacagtatgaagaaaccctttaagattacgatcacaaccatcattctcatgtgcatcttcaacacc 6328424  T
Q  137 ataaaccagcattccacgtaaaccggcttcattcaacccggc-aatactttttccagcggtgatagcatcttctccagcacaaaaat 222  Q
    | |||| ||||| |||||||| || |||||||| |||    |  ||||| |||||||| || |||||||||||||||||||||||||    
T  6328425 aaaaacaagcatgccacgtaagccagcttcatt-aacagaccttatactctttccagcagtaatagcatcttctccagcacaaaaat 6328510  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 37 - 222
Target Start/End: Original strand, 6335883 - 6336068
Alignment:
Q  37 ttaccgaagatggaggaagcgatctgctgacatcaacggtgtgaagaaaacctttgagattgcgatcacagccagcattatcatgagcatcttcaacgcc 136  Q
    |||| ||||| |||||||| ||| |||| |||||||| || |||||||| ||||| ||||| |||||||| ||| |||| ||||| ||||||||||| ||    
T  6335883 ttacagaagaaggaggaagtgatttgctaacatcaacagtatgaagaaaccctttaagattacgatcacaaccatcattctcatgtgcatcttcaacacc 6335982  T
Q  137 ataaaccagcattccacgtaaaccggcttcattcaacccggc-aatactttttccagcggtgatagcatcttctccagcacaaaaat 222  Q
    | |||| ||||| |||||||| || |||||||| |||    |  ||||| |||||||| || |||||||||||||||||||||||||    
T  6335983 aaaaacaagcatgccacgtaagccagcttcatt-aacagaccttatactctttccagcagtaatagcatcttctccagcacaaaaat 6336068  T

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Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 37 - 222
Target Start/End: Original strand, 6350868 - 6351053
Alignment:
Q  37 ttaccgaagatggaggaagcgatctgctgacatcaacggtgtgaagaaaacctttgagattgcgatcacagccagcattatcatgagcatcttcaacgcc 136  Q
    |||| ||||| |||||||| ||| |||| |||||||| || |||||||| ||||| ||||| |||||||| ||| |||| ||||| ||||||||||| ||    
T  6350868 ttacagaagaaggaggaagtgatttgctaacatcaacagtatgaagaaaccctttaagattacgatcacaaccatcattctcatgtgcatcttcaacacc 6350967  T
Q  137 ataaaccagcattccacgtaaaccggcttcattcaacccggc-aatactttttccagcggtgatagcatcttctccagcacaaaaat 222  Q
    | |||| ||||| |||||||| || |||||||| |||    |  ||||| |||||||| || |||||||||||||||||||||||||    
T  6350968 aaaaacaagcatgccacgtaagccagcttcatt-aacagaccttatactctttccagcagtaatagcatcttctccagcacaaaaat 6351053  T

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