View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13866_low_32 (Length: 238)
Name: NF13866_low_32
Description: NF13866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13866_low_32 |
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| [»] scaffold0186 (1 HSPs) |
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Alignment Details
Target: scaffold0186 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: scaffold0186
Description:
Target: scaffold0186; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 4039 - 3806
Alignment:
| Q |
1 |
tttctttttaattgtaattctaattcatcgtaggctctattattttaatctcttaaaaggcaaaataatttttatatatnnnnnnnnnncaaat------ |
94 |
Q |
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||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||| |||| |
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| T |
4039 |
tttctttttaattgtaattttaattcatcgtaggctttattattttaatttcttaaaaggccaaataatttttatatataaaaataaaaaaaataaaaaa |
3940 |
T |
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| Q |
95 |
-------atgatttgtacaagctcttttaaacaaatggattgcatcacactcacattctaaacaattgcatccaacaaaaaatcatctatagtagttgta |
187 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3939 |
aacaaatatgatttgtacaagctcttttaaacaaatggattgcatcacactcacattctaaacaattgcatccaacaaaaaatcatctatagtagttgta |
3840 |
T |
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| Q |
188 |
tgcataaaaccaacataagatactacttaaaatt |
221 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
3839 |
tgcataaaaccaacataagatactacttaaaatt |
3806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 130 - 221
Target Start/End: Original strand, 28732882 - 28732974
Alignment:
| Q |
130 |
catcacactcacattctaaacaattgcatccaacaaaa-aatcatctatagtagttgtatgcataaaaccaacataagatactacttaaaatt |
221 |
Q |
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| T |
28732882 |
catcacactcacactctaaacaattgcatccaacaaaaaaatcatctatagtagctgtatgcataaaaccaacacaagatactacttaaaatt |
28732974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 130 - 221
Target Start/End: Complemental strand, 18852484 - 18852394
Alignment:
| Q |
130 |
catcacactcacattctaaacaattgcatccaacaaaaaatcatctatagtagttgtatgcataaaaccaacataagatactacttaaaatt |
221 |
Q |
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|||||| |||||| |||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
18852484 |
catcactctcacactctaaacaattgcacccaacaaaaaaa-atctatagtagctgtatgcataaaaccaacacaagatactacttaaaatt |
18852394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 18852624 - 18852547
Alignment:
| Q |
1 |
tttctttttaattgtaattctaattcatcgtaggctctattattttaatctcttaaaaggcaaaataatttttatata |
78 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||| |||||||||||||||| |
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| T |
18852624 |
tttctttttaattgtaattctaattcatcgtaagctctattattttaaattattaaaaggccaaataatttttatata |
18852547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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