View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13866_low_4 (Length: 529)
Name: NF13866_low_4
Description: NF13866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13866_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 455; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 11 - 514
Target Start/End: Original strand, 43109441 - 43109944
Alignment:
| Q |
11 |
catcatcataggcttttgagaagtgcaatcagcatagtctgattcacatccatgttcatcggatgataatgatttccgaagaatcctgcgcgaacaattg |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43109441 |
catcatcataggcttttgagaagtgcaatcagcatagtctgattcacatccttgttcatcggatgataatgatttccgaagaatcctgcgcgaacaattg |
43109540 |
T |
|
| Q |
111 |
aagaaattgaaagatgacctcttcaacctagcatacttagaatctgtagtacatggaacatggttgattctgagctcaatgttgcaacccaatatgaact |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43109541 |
aagaaattgaaagatgacctcttcaacctagcatacttagaatctgtagtacatggaacatggttgattctgagctcaatgttgcaacccaatatgaact |
43109640 |
T |
|
| Q |
211 |
gcagggaacttgcaatttgtttccatgacttttcagctctagctacatagacacggtggtggaattccaactccacaactgcaagacctgaaaaatggag |
310 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
43109641 |
gtagggaacttgcaatttgtttccatgacttttcagctctagctacatagacacggtggtggaattccaactccacagctgcaagacctgaaaattggag |
43109740 |
T |
|
| Q |
311 |
tacatttcattcaattagttgataaagttgagtaacaaaacttaaatttaaaatttcaaacaagtccttttatcnnnnnnncatgtcaaattagtctttt |
410 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
43109741 |
tacatttcattcaattagttgataaagttgagtaacaaaacttaaatttaaaatttcaaacaagtccttttatctttttttcatgtcaaattagtctttt |
43109840 |
T |
|
| Q |
411 |
agcattaaaatgtctacatcattgaaccaactttcattcttaatccacttatgttataaatttgtgtacatgaacattgaataatatactataaggaata |
510 |
Q |
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||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43109841 |
agctttaaaatgtctacatcattaaaccaactttcattcttaatccacttatgttacaaatttgtgtacatgaacattgaataatatactataaggaata |
43109940 |
T |
|
| Q |
511 |
catc |
514 |
Q |
| |
|
|||| |
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|
| T |
43109941 |
catc |
43109944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 481
Target Start/End: Original strand, 8954459 - 8954504
Alignment:
| Q |
436 |
accaactttcattcttaatccacttatgttataaatttgtgtacat |
481 |
Q |
| |
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||||||||| |||||| |||||||| |||||||||||| ||||||| |
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| T |
8954459 |
accaactttgattctttatccacttttgttataaatttctgtacat |
8954504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 394 - 504
Target Start/End: Complemental strand, 41633502 - 41633391
Alignment:
| Q |
394 |
tgtcaaattagtcttttagcatt-aaaatgtctacatcattgaaccaactttcattcttaatccacttatgttataaatttgtgtacatgaacattgaat |
492 |
Q |
| |
|
|||||||||| ||||||| | || ||||||| |||| | |||||||| |||| ||||||| || |||| |||||||||||||||||||||| |||||||| |
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| T |
41633502 |
tgtcaaattattcttttatctttcaaaatgtttacacctttgaaccatcttttattcttagtcgacttctgttataaatttgtgtacatgatcattgaat |
41633403 |
T |
|
| Q |
493 |
aatatactataa |
504 |
Q |
| |
|
||||||||||| |
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|
| T |
41633402 |
gatatactataa |
41633391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 394 - 492
Target Start/End: Original strand, 10196173 - 10196272
Alignment:
| Q |
394 |
tgtcaaattagtcttttagcattaaaat-gtctacatcattgaaccaactttcattcttaatccacttatgttataaatttgtgtacatgaacattgaat |
492 |
Q |
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|
|||||||||||||||||| | ||||||| || ||| | ||||||||||||||||| ||| ||||||| ||||| |||||||||||||||| ||||||| |
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|
| T |
10196173 |
tgtcaaattagtcttttatctttaaaattgttcacaccgttgaaccaactttcatttttagtccacttctgttacaaatttgtgtacatgataattgaat |
10196272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 508
Target Start/End: Original strand, 45231992 - 45232061
Alignment:
| Q |
439 |
aactttcattcttaatccacttatgttataaatttgtgtacatgaacattgaataatatactataaggaa |
508 |
Q |
| |
|
|||||||||||||| | |||| ||||| |||||||| |||| || ||||||| ||||||| |||||||| |
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|
| T |
45231992 |
aactttcattcttagtttacttctgttacaaatttgtttacacgatcattgaacaatatacgataaggaa |
45232061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 394 - 504
Target Start/End: Original strand, 12692571 - 12692681
Alignment:
| Q |
394 |
tgtcaaattagtcttttagcattaaaa-tgtctacatcattgaaccaactttcattcttaatccacttatgttataaatttgtgtacatgaacattgaat |
492 |
Q |
| |
|
|||||||||||||||||| | |||||| ||| |||| ||||||||||||||||||||||| | ||| ||||||| |||||||||| | ||| || ||||| |
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| T |
12692571 |
tgtcaaattagtcttttatctttaaaaatgtttacaccattgaaccaactttcattcttagttcac-tatgttacaaatttgtgtgcgtgatcaatgaat |
12692669 |
T |
|
| Q |
493 |
aatatactataa |
504 |
Q |
| |
|
||||||||||| |
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|
| T |
12692670 |
gatatactataa |
12692681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 471 - 503
Target Start/End: Original strand, 21485486 - 21485518
Alignment:
| Q |
471 |
tttgtgtacatgaacattgaataatatactata |
503 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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| T |
21485486 |
tttgtgtacatgaacattgaataatatactata |
21485518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 394 - 509
Target Start/End: Original strand, 24099050 - 24099166
Alignment:
| Q |
394 |
tgtcaaattagtcttttagcattaaaa-tgtctacatcattgaaccaactttcattcttaatccacttatgttataaatttgtgtacatgaacattgaat |
492 |
Q |
| |
|
||||||||||||||||| | |||||| ||| | || | ||||||||||||||||||||| ||| ||| ||||| |||||| ||||||||| |||||| | |
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| T |
24099050 |
tgtcaaattagtcttttgcctttaaaaatgtttgcaccgttgaaccaactttcattcttagtccgcttttgttacaaatttatgtacatgatcattgagt |
24099149 |
T |
|
| Q |
493 |
aatatactataaggaat |
509 |
Q |
| |
|
||||||||||| |||| |
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|
| T |
24099150 |
gatatactataaagaat |
24099166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 482
Target Start/End: Original strand, 13252937 - 13253004
Alignment:
| Q |
415 |
ttaaaatgtctacatcattgaaccaactttcattcttaatccacttatgttataaatttgtgtacatg |
482 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||| ||||||| | ||| |||| ||||| |||| |
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|
| T |
13252937 |
ttaaaatgtttacatcgttgaaccaactttcattcttcgtccacttttattacaaatctgtgttcatg |
13253004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 481
Target Start/End: Complemental strand, 33994289 - 33994238
Alignment:
| Q |
430 |
cattgaaccaactttcattcttaatccacttatgttataaatttgtgtacat |
481 |
Q |
| |
|
|||||| ||||||||| |||||||||||||| | ||| |||||||||||||| |
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|
| T |
33994289 |
cattgatccaactttctttcttaatccacttctattacaaatttgtgtacat |
33994238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 434 - 502
Target Start/End: Complemental strand, 34000886 - 34000818
Alignment:
| Q |
434 |
gaaccaactttcattcttaatccacttatgttataaatttgtgtacatgaacattgaataatatactat |
502 |
Q |
| |
|
|||| |||||||||||||| || |||||||||| |||||| | | ||||| |||| || |||||||||| |
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|
| T |
34000886 |
gaacgaactttcattcttagtcaacttatgttacaaatttttatgcatgatcatttaacaatatactat |
34000818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 510
Target Start/End: Complemental strand, 18268619 - 18268566
Alignment:
| Q |
457 |
acttatgttataaatttgtgtacatgaacattgaataatatactataaggaata |
510 |
Q |
| |
|
|||||||| | |||||||||||||||| ||||||| ||||||||||| ||||| |
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|
| T |
18268619 |
acttatgtaacaaatttgtgtacatgattattgaatgatatactataaagaata |
18268566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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