View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13866_low_5 (Length: 500)

Name: NF13866_low_5
Description: NF13866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13866_low_5
NF13866_low_5
[»] chr8 (8 HSPs)
chr8 (131-265)||(12207734-12207868)
chr8 (131-265)||(12452162-12452296)
chr8 (20-59)||(12207940-12207979)
chr8 (20-59)||(12452368-12452407)
chr8 (399-434)||(12207544-12207579)
chr8 (399-434)||(12451972-12452007)
chr8 (293-330)||(12207648-12207685)
chr8 (293-330)||(12452076-12452113)
[»] chr5 (1 HSPs)
chr5 (21-57)||(23906612-23906648)


Alignment Details
Target: chr8 (Bit Score: 131; Significance: 9e-68; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 131 - 265
Target Start/End: Complemental strand, 12207868 - 12207734
Alignment:
Q  131 gttacagcacaagttaaatgtaaaactgttaaagattgtccaataagacggaatcgcaagtattattgccttttcggtatatgtaaatatgatgtcatgt 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12207868 gttacagcacaagttaaatgtaaaactgttaaagattgtccaataagacggaatcgcaagtattattgccttttcggtatatgtaaatatgatgtcatgt 12207769  T
Q  231 agaaacctattgtaagataaaacccaagagagcaa 265  Q
    |||||||||||||||||||| ||||||||||||||    
T  12207768 agaaacctattgtaagataagacccaagagagcaa 12207734  T

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Target: chr8; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 131 - 265
Target Start/End: Complemental strand, 12452296 - 12452162
Alignment:
Q  131 gttacagcacaagttaaatgtaaaactgttaaagattgtccaataagacggaatcgcaagtattattgccttttcggtatatgtaaatatgatgtcatgt 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12452296 gttacagcacaagttaaatgtaaaactgttaaagattgtccaataagacggaatcgcaagtattattgccttttcggtatatgtaaatatgatgtcatgt 12452197  T
Q  231 agaaacctattgtaagataaaacccaagagagcaa 265  Q
    |||||||||||||||||||| ||||||||||||||    
T  12452196 agaaacctattgtaagataagacccaagagagcaa 12452162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 12207979 - 12207940
Alignment:
Q  20 cttaccctatttcttattgtaaagaacgttgacggtaaac 59  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  12207979 cttaccctattttttattgtaaagaacgttgacggtaaac 12207940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 12452407 - 12452368
Alignment:
Q  20 cttaccctatttcttattgtaaagaacgttgacggtaaac 59  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  12452407 cttaccctattttttattgtaaagaacgttgacggtaaac 12452368  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 434
Target Start/End: Complemental strand, 12207579 - 12207544
Alignment:
Q  399 gtaatttcatagacctatgtttgtgtattccgagat 434  Q
    ||||||||||||||||||| ||||||||||||||||    
T  12207579 gtaatttcatagacctatggttgtgtattccgagat 12207544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 434
Target Start/End: Complemental strand, 12452007 - 12451972
Alignment:
Q  399 gtaatttcatagacctatgtttgtgtattccgagat 434  Q
    ||||||||||||||||||| ||||||||||||||||    
T  12452007 gtaatttcatagacctatggttgtgtattccgagat 12451972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 330
Target Start/End: Complemental strand, 12207685 - 12207648
Alignment:
Q  293 tatgcaatatatcttgtgccaaaaatttcgtagttctg 330  Q
    ||||||||||||||||| ||||||||||||||| ||||    
T  12207685 tatgcaatatatcttgtaccaaaaatttcgtagctctg 12207648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 330
Target Start/End: Complemental strand, 12452113 - 12452076
Alignment:
Q  293 tatgcaatatatcttgtgccaaaaatttcgtagttctg 330  Q
    ||||||||||||||||| ||||||||||||||| ||||    
T  12452113 tatgcaatatatcttgtaccaaaaatttcgtagctctg 12452076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 23906648 - 23906612
Alignment:
Q  21 ttaccctatttcttattgtaaagaacgttgacggtaa 57  Q
    |||||||||||||| ||| ||||||||||||||||||    
T  23906648 ttaccctatttcttgttgcaaagaacgttgacggtaa 23906612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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