View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13866_low_6 (Length: 497)

Name: NF13866_low_6
Description: NF13866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13866_low_6
NF13866_low_6
[»] chr1 (2 HSPs)
chr1 (1-497)||(50439164-50439693)
chr1 (400-490)||(39559320-39559410)


Alignment Details
Target: chr1 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 497
Target Start/End: Original strand, 50439164 - 50439693
Alignment:
Q  1 cattaagaacatctttcaagagagatttgagataagagattgaggttgattgattaaaaacagttgcaattagggtagaatct----------------- 83  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||                     
T  50439164 cattaagaacatctttcaagagaaatttgagataagagattgaggctgattgattaaaaacagttgcaattagagtagaatctgtctaaaaaacgacatg 50439263  T
Q  84 --caaggtgaagattgcgagcaatacacatggcatgaactaaactttacatctcagcacactgagaatggtt-gcgagcaagattacaata--------- 171  Q
      |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||             
T  50439264 atcaaggtgaagattgtgagcaatacacatggcatgaactaaactttacatctcagcacactgagaatggtttgcgagcaagattacaatagaaaccctg 50439363  T
Q  172 ----agactacattggtagtctctaagcaaatctccacaagctgaaaagccattcatttttctatgagcttcatctacattaaacttggttgggattccc 267  Q
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50439364 tataagactacattggtagtctctaagcaaatctccacaagctgaaaagccattcatttttctatgagcttcatctacattaaacttggttgggattccc 50439463  T
Q  268 atttgatatggatggtggtgctagaactctccattttcactttgttggcaatatggtcaattagacctccacatagaatggaatattgatgaaataaaac 367  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||||| ||||||||||||||||||||||||||||||||    
T  50439464 atttgatatggatggtggtgctagaactctccattttcactttgttggcaatatggataagtagacccccacatagaatggaatattgatgaaataaaac 50439563  T
Q  368 agttcattatgatccttctacaaagctaaaaaatttccaatatcatcgttaccaaggttccattcaagccaaggcatgaaacctagactaaagaatttcg 467  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50439564 agttcattatgatccttctacaaagctaaaaaatttccaatatcatcgtcaccaaggttccattcaagccaaggcatgaaacctagactaaagaatttcg 50439663  T
Q  468 cccaataatatggtttgatgattggggacc 497  Q
    ||||||||||||||||||||||||||||||    
T  50439664 cccaataatatggtttgatgattggggacc 50439693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 400 - 490
Target Start/End: Original strand, 39559320 - 39559410
Alignment:
Q  400 atttccaatatcatcgttaccaaggttccattcaagccaaggcatgaaacctagactaaagaatttcgcccaataatatggtttgatgatt 490  Q
    |||||||||||| ||||| | |||||||||||||||||||||||||| |||||  ||||||||||| || ||||||| | |||||||||||    
T  39559320 atttccaatatcttcgttgctaaggttccattcaagccaaggcatgagacctatgctaaagaatttagctcaataatctagtttgatgatt 39559410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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