View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13866_low_7 (Length: 466)

Name: NF13866_low_7
Description: NF13866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13866_low_7
NF13866_low_7
[»] chr4 (5 HSPs)
chr4 (1-371)||(43944898-43945251)
chr4 (433-466)||(34657938-34657971)
chr4 (81-114)||(43944459-43944492)
chr4 (428-466)||(33040599-33040637)
chr4 (54-114)||(20037696-20037761)
[»] chr3 (8 HSPs)
chr3 (1-422)||(5883027-5883434)
chr3 (1-261)||(54944487-54944726)
chr3 (80-114)||(54944966-54945000)
chr3 (81-114)||(5883608-5883641)
chr3 (429-466)||(10623260-10623297)
chr3 (429-466)||(1051342-1051379)
chr3 (429-466)||(16309690-16309727)
chr3 (429-466)||(18490684-18490721)
[»] scaffold0182 (2 HSPs)
scaffold0182 (1-423)||(7486-7891)
scaffold0182 (81-114)||(8064-8097)
[»] chr6 (10 HSPs)
chr6 (1-371)||(16857786-16858134)
chr6 (54-114)||(26720369-26720429)
chr6 (433-466)||(8483657-8483690)
chr6 (429-466)||(9351149-9351186)
chr6 (429-466)||(11650855-11650892)
chr6 (429-466)||(14641452-14641489)
chr6 (429-466)||(20589649-20589686)
chr6 (429-466)||(24617758-24617795)
chr6 (430-466)||(7242900-7242936)
chr6 (82-126)||(18883993-18884037)
[»] chr7 (6 HSPs)
chr7 (1-261)||(47931686-47931925)
chr7 (80-114)||(47932164-47932198)
chr7 (429-466)||(1862352-1862389)
chr7 (429-466)||(980935-980972)
chr7 (429-466)||(12163411-12163448)
chr7 (429-466)||(37375025-37375062)
[»] chr1 (8 HSPs)
chr1 (429-466)||(19054410-19054447)
chr1 (429-466)||(18332726-18332763)
chr1 (429-466)||(34528944-34528981)
chr1 (82-126)||(39624884-39624928)
chr1 (429-466)||(10423826-10423863)
chr1 (429-466)||(16816259-16816296)
chr1 (429-466)||(41917094-41917131)
chr1 (82-114)||(22911349-22911381)
[»] scaffold0009 (1 HSPs)
scaffold0009 (429-466)||(1519-1556)
[»] chr8 (6 HSPs)
chr8 (429-466)||(16290872-16290909)
chr8 (428-466)||(29840876-29840914)
chr8 (429-466)||(18036841-18036878)
chr8 (429-466)||(19742058-19742095)
chr8 (429-466)||(26867474-26867511)
chr8 (429-466)||(43856134-43856171)
[»] chr2 (4 HSPs)
chr2 (429-466)||(40926486-40926523)
chr2 (82-113)||(29456769-29456800)
chr2 (82-113)||(43565561-43565592)
chr2 (429-466)||(1490670-1490707)
[»] scaffold0437 (1 HSPs)
scaffold0437 (429-466)||(11430-11467)
[»] scaffold0068 (1 HSPs)
scaffold0068 (429-466)||(2310-2347)
[»] chr5 (4 HSPs)
chr5 (429-466)||(2259422-2259459)
chr5 (429-466)||(15614753-15614790)
chr5 (429-466)||(21711563-21711600)
chr5 (429-466)||(28637634-28637671)


Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 43945251 - 43944898
Alignment:
Q  1 aatctttcttatttaacccattttgtggaggataaaacatattaagaagtgttacttgaaattactttcattattatagttattagatagaataagaaag 100  Q
    |||||||||||||||||  |||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  43945251 aatctttcttatttaactaattttgtaaaggataaaacatattaagaagtgttacttgaaattactttcgttattatagttattagatagaagaagaaag 43945152  T
Q  101 ggtgagaagttataagatatgtgagagatgttttatatgcgagaagattttttatacgtgagaatgttttttcaaaaaggaattacacttgaagaacatt 200  Q
     ||||||||||||||||||||| |||                  | |||||||||| ||||||||||||||| ||||||||||||||||||| |||||||    
T  43945151 agtgagaagttataagatatgtaaga------------------atattttttatatgtgagaatgttttttgaaaaaggaattacacttgatgaacatt 43945070  T
Q  201 aaaacccacttcgaaattcatctgagagttgcatcggataatagagtttttgttggctact-tattagatagaataatagagtcgtgaaacttgtttaga 299  Q
    |||||||||||| |||||||||  ||||||||||  | ||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||    
T  43945069 aaaacccacttccaaattcatccaagagttgcattaggtaatagagtttttgttggctactctattagatagaataat--agtcgtgaaacttgtttaga 43944972  T
Q  300 tcgtacacattatgagaatattttttgaa-tacaactgaatttag-ttacaaagaatttagctaaatactaata 371  Q
    || |||||||||||| |||||||||||||  ||| | |||||||| ||||||||||||||||||||||||||||    
T  43944971 tcttacacattatgacaatattttttgaagaacagccgaatttagtttacaaagaatttagctaaatactaata 43944898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 433 - 466
Target Start/End: Complemental strand, 34657971 - 34657938
Alignment:
Q  433 gaggttccccggggtgccaacctagttgggatgt 466  Q
    ||||||||||||||||||||||||||||||||||    
T  34657971 gaggttccccggggtgccaacctagttgggatgt 34657938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 81 - 114
Target Start/End: Complemental strand, 43944492 - 43944459
Alignment:
Q  81 tattagatagaataagaaagggtgagaagttata 114  Q
    ||||||||||||||||||||||||||||||||||    
T  43944492 tattagatagaataagaaagggtgagaagttata 43944459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 428 - 466
Target Start/End: Complemental strand, 33040637 - 33040599
Alignment:
Q  428 tgatggaggttccccggggtgccaacctagttgggatgt 466  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  33040637 tgatggaggtttctcggggtgccaacctagttgggatgt 33040599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 114
Target Start/End: Complemental strand, 20037761 - 20037696
Alignment:
Q  54 acttgaaattactttcattattatagttattagat-----agaataagaaagggtgagaagttata 114  Q
    |||| ||||||||| |||||||||| |||||||||     ||||||| ||||||||||||||||||    
T  20037761 acttaaaattacttgcattattataattattagattagatagaataataaagggtgagaagttata 20037696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 175; Significance: 5e-94; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 5883027 - 5883434
Alignment:
Q  1 aatctttcttatttaacccattttgtggaggataaaacatattaagaagtgttacttgaaattactttcattattatagttattagatagaataagaaag 100  Q
    |||||||||||||||||  |||||||  ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  5883027 aatctttcttatttaactaattttgtaaaggataaaacatattaagaagtgttacttgaaattacttttgttattatagttattagatagaataagaaag 5883126  T
Q  101 ggtgagaagttataagatatgtgagagatgttttatatgcgagaagattttttatacgtgagaatgttttttcaaaaaggaattacacttgaagaacatt 200  Q
     |||||||||||||||||||||||||   | |||              |||||||| ||||||||||||||| ||||||||||||||||||| |||||||    
T  5883127 agtgagaagttataagatatgtgagaa--gattt--------------tttttatatgtgagaatgttttttgaaaaaggaattacacttgatgaacatt 5883210  T
Q  201 aaaacccacttcgaaattcatctgagagttgcatcggataatagagtttttgttggctact-tattagatagaataatagagtcgtgaaacttgtttaga 299  Q
    |||| ||||||| |||||||||  ||||||| ||  | ||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||     
T  5883211 aaaatccacttcaaaattcatccaagagttgtattaggtaatagagtttttgttggctactatattagatagaataat--agtcgtgaaacttgtttagt 5883308  T
Q  300 tcgtacacattatgagaatattttttgaa-tacaactgaatttag-ttacaaagaatttagctaaatactaat------atgtgcaacatatattagatt 391  Q
    || |||||||||||| |||||||| ||||  |||||  ||||||| |||||||||||||| ||||||||||||      |||||||||||||     |||    
T  5883309 tcttacacattatgacaatattttctgaagaacaaccaaatttagtttacaaagaatttaactaaatactaataaaaaaatgtgcaacatat-----att 5883403  T
Q  392 ggtcttgatgtgagaacaataagctcaaaaa 422  Q
    ||||||||| ||||||| |||||||||||||    
T  5883404 ggtcttgatatgagaacgataagctcaaaaa 5883434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 54944487 - 54944726
Alignment:
Q  1 aatctttcttatttaacccattttgtggaggataaaacatattaagaagtgttacttgaaattactttcattattatagttattagatagaataagaaag 100  Q
    |||||||||||||||||  |||||||  |||||||  ||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||    
T  54944487 aatctttcttatttaactaattttgtaaaggataa--catattaagaagtgttacttgaaattaattttgttattatagttattagatagaataagaaag 54944584  T
Q  101 ggtgagaagttataagatatgtgagagatgttttatatgcgagaagattttttatacgtgagaatgttttttcaaaaaggaattacacttgaagaacatt 200  Q
     |||||||||||||||||||||||||               |||   |||||||||  ||| |||||||||| ||||||||||||||||||| |||||||    
T  54944585 agtgagaagttataagatatgtgaga---------------aga--tttttttatatatgaaaatgttttttgaaaaaggaattacacttgatgaacatt 54944667  T
Q  201 aaaacccacttcgaaattcatctgagagttgcatcggataatagagtttttgttggctact 261  Q
    |||||||||||| |||||||  | ||||||| ||  | ||||||| |||||||||||||||    
T  54944668 aaaacccacttccaaattca--taagagttgtattaggtaatagaatttttgttggctact 54944726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 114
Target Start/End: Original strand, 54944966 - 54945000
Alignment:
Q  80 ttattagatagaataagaaagggtgagaagttata 114  Q
    |||||||||||||||||||||||||||||||||||    
T  54944966 ttattagatagaataagaaagggtgagaagttata 54945000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 81 - 114
Target Start/End: Original strand, 5883608 - 5883641
Alignment:
Q  81 tattagatagaataagaaagggtgagaagttata 114  Q
    ||||||||||||||||||||||||||||||||||    
T  5883608 tattagatagaataagaaagggtgagaagttata 5883641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 429 - 466
Target Start/End: Complemental strand, 10623297 - 10623260
Alignment:
Q  429 gatggaggttccccggggtgccaacctagttgggatgt 466  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  10623297 gatggaggttccccggggtgccaacctagttaggatgt 10623260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 466
Target Start/End: Complemental strand, 1051379 - 1051342
Alignment:
Q  429 gatggaggttccccggggtgccaacctagttgggatgt 466  Q
    |||||||||| |||| ||||||||||||||||||||||    
T  1051379 gatggaggtttcccgaggtgccaacctagttgggatgt 1051342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 466
Target Start/End: Complemental strand, 16309727 - 16309690
Alignment:
Q  429 gatggaggttccccggggtgccaacctagttgggatgt 466  Q
    ||||||||||| ||||||||||||| ||||||||||||    
T  16309727 gatggaggttctccggggtgccaacttagttgggatgt 16309690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 466
Target Start/End: Complemental strand, 18490721 - 18490684
Alignment:
Q  429 gatggaggttccccggggtgccaacctagttgggatgt 466  Q
    ||||||||||| ||||||||||||| ||||||||||||    
T  18490721 gatggaggttctccggggtgccaacttagttgggatgt 18490684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 7486 - 7891
Alignment:
Q  1 aatctttcttatttaacccattttgtggaggataaaacatattaagaagtgttacttgaaattactttcattattatagttattagatagaataagaaag 100  Q
    |||||||||||||||||  |||||||  ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  7486 aatctttcttatttaactaattttgtaaaggataaaacatattaagaagtgttacttgaaattacttttgttattatagttattagatagaataagaaag 7585  T
Q  101 ggtgagaagttataagatatgtgagagatgttttatatgcgagaagattttttatacgtgagaatgttttttcaaaaaggaattacacttgaagaacatt 200  Q
     |||||| ||||||||||||| || ||||                  ||||||||| ||||||||||||||| ||||||||||||||||||| || ||||    
T  7586 agtgagaggttataagatatgaga-agat------------------ttttttatatgtgagaatgttttttgaaaaaggaattacacttgatgatcatt 7666  T
Q  201 aaaacccacttcgaaattcatctgagagttgcatcggataatagagtttttgttggctact-tattagatagaataatagagtcgtgaaacttgtttaga 299  Q
    |||||||||||  |||||||||  ||||||| ||  | ||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||    
T  7667 aaaacccactttcaaattcatccaagagttgtattaggtaatagagtttttgttggctactatattagatagaataat--agtcgtgaaacttgtttaga 7764  T
Q  300 tcgtacacattatgagaatattttttgaa-tacaactgaatttag-ttacaaagaatttagctaaatactaat------atgtgcaacatatattagatt 391  Q
    || |||||||||||| |||||||| ||||  |||||  ||||||| |||||||||||||||||||||||||||      |||||||||||||     |||    
T  7765 tcttacacattatgacaatattttctgaagaacaaccaaatttagtttacaaagaatttagctaaatactaataaaaaaatgtgcaacatat-----att 7859  T
Q  392 ggtcttgatgtgagaacaataagctcaaaaaa 423  Q
    ||||||||| ||||||| ||||||||||||||    
T  7860 ggtcttgatatgagaacgataagctcaaaaaa 7891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 81 - 114
Target Start/End: Original strand, 8064 - 8097
Alignment:
Q  81 tattagatagaataagaaagggtgagaagttata 114  Q
    ||||||||||||||||||||||||||||||||||    
T  8064 tattagatagaataagaaagggtgagaagttata 8097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 143; Significance: 6e-75; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 16858134 - 16857786
Alignment:
Q  1 aatctttcttatttaacccattttgtggaggataaaacatattaagaagtgttacttgaaattactttcattattatagttattagatagaataagaaag 100  Q
    |||||||||||||||||  |||||||  ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  16858134 aatctttcttatttaactaattttgtaaaggataaaacatattaagaagtgttacttgaaattacttttgttattatagttattagatagaataagaaag 16858035  T
Q  101 ggtgagaagttataagatatgtgagagatgttttatatgcgagaagattttttatacgtgagaatgttttttcaaaaaggaattacacttgaagaacatt 200  Q
     ||||||| |||||||||||||||||               |||   ||||||||| | ||||||||||||| ||||||||||||||||||| |||||||    
T  16858034 agtgagaatttataagatatgtgaga---------------aga--tttttttatatgggagaatgttttttgaaaaaggaattacacttgatgaacatt 16857952  T
Q  201 aaaacccacttcgaaattcatctgagagttgcatcggataatagagtttttgttggctact-tattagatagaataatagagtcgtgaaacttgtttaga 299  Q
    |||| ||||||| |||||||||  ||||||| ||  | ||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||    
T  16857951 aaaatccacttccaaattcatccaagagttgtattaggtaatagagtttttgttggctactatattagatagaataat--agtcgtgaaacttgtttaga 16857854  T
Q  300 tcgtacacattatgagaatattttttgaa-tacaactgaattt-agttacaaagaatttagctaaatactaata 371  Q
    || ||||      || |||||||||||||  | |||  ||||| | ||||||||||||||||||||||||||||    
T  16857853 tcttaca------gacaatattttttgaagaagaaccaaatttaatttacaaagaatttagctaaatactaata 16857786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 54 - 114
Target Start/End: Original strand, 26720369 - 26720429
Alignment:
Q  54 acttgaaattactttcattattatagttattagatagaataagaaagggtgagaagttata 114  Q
    |||| ||||||||| |||| ||||| |||||||||||||||||||||| ||||||||||||    
T  26720369 acttaaaattacttgcattcttataattattagatagaataagaaaggatgagaagttata 26720429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 433 - 466
Target Start/End: Complemental strand, 8483690 - 8483657
Alignment:
Q  433 gaggttccccggggtgccaacctagttgggatgt 466  Q
    ||||||||||||||||||||||||||||||||||    
T  8483690 gaggttccccggggtgccaacctagttgggatgt 8483657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 466
Target Start/End: Complemental strand, 9351186 - 9351149
Alignment:
Q  429 gatggaggttccccggggtgccaacctagttgggatgt 466  Q
    |||||||||| | |||||||||||||||||||||||||    
T  9351186 gatggaggtttctcggggtgccaacctagttgggatgt 9351149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 466
Target Start/End: Original strand, 11650855 - 11650892
Alignment:
Q  429 gatggaggttccccggggtgccaacctagttgggatgt 466  Q
    |||||||||||||  |||||||||||||||||||||||    
T  11650855 gatggaggttccctagggtgccaacctagttgggatgt 11650892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 466
Target Start/End: Original strand, 14641452 - 14641489
Alignment:
Q  429 gatggaggttccccggggtgccaacctagttgggatgt 466  Q
    |||||||| | |||||||||||||||||||||||||||    
T  14641452 gatggagggttcccggggtgccaacctagttgggatgt 14641489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 466
Target Start/End: Original strand, 20589649 - 20589686
Alignment:
Q  429 gatggaggttccccggggtgccaacctagttgggatgt 466  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  20589649 gatggaggttctccggggtgccaacctagttgagatgt 20589686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 466
Target Start/End: Complemental strand, 24617795 - 24617758
Alignment:
Q  429 gatggaggttccccggggtgccaacctagttgggatgt 466  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  24617795 gatggaggttttccggggtgccaacctagttgggatgt 24617758  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 430 - 466
Target Start/End: Complemental strand, 7242936 - 7242900
Alignment:
Q  430 atggaggttccccggggtgccaacctagttgggatgt 466  Q
    |||| |||||| |||||||||||||||||||||||||    
T  7242936 atgggggttcctcggggtgccaacctagttgggatgt 7242900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 126
Target Start/End: Complemental strand, 18884037 - 18883993
Alignment:
Q  82 attagatagaataagaaagggtgagaagttataagatatgtgaga 126  Q
    ||||||||||||||||||| ||||||| |||||  ||||||||||    
T  18884037 attagatagaataagaaagagtgagaaattatactatatgtgaga 18883993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 94; Significance: 1e-45; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 47931686 - 47931925
Alignment:
Q  1 aatctttcttatttaacccattttgtggaggataaaacatattaagaagtgttacttgaaattactttcattattatagttattagatagaataagaaag 100  Q
    |||||||||||||||||  |||||||  |||||||  ||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||    
T  47931686 aatctttcttatttaactaattttgtaaaggataa--catattaagaagtgttacttgaaattaattttgttattatagttattagatagaataagaaag 47931783  T
Q  101 ggtgagaagttataagatatgtgagagatgttttatatgcgagaagattttttatacgtgagaatgttttttcaaaaaggaattacacttgaagaacatt 200  Q
     |||||||||||||||||||||||||               |||   |||||||||  ||| |||||||||| ||||||||||||||||||| |||||||    
T  47931784 agtgagaagttataagatatgtgaga---------------aga--tttttttatatatgaaaatgttttttgaaaaaggaattacacttgatgaacatt 47931866  T
Q  201 aaaacccacttcgaaattcatctgagagttgcatcggataatagagtttttgttggctact 261  Q
    |||||||||||| |||||||  | ||||||| ||  | ||||||| |||||||||||||||    
T  47931867 aaaacccacttccaaattca--taagagttgtattaggtaatagaatttttgttggctact 47931925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 114
Target Start/End: Original strand, 47932164 - 47932198
Alignment:
Q  80 ttattagatagaataagaaagggtgagaagttata 114  Q
    |||||||||||||||||||||||||||||||||||    
T  47932164 ttattagatagaataagaaagggtgagaagttata 47932198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 429 - 466
Target Start/End: Complemental strand, 1862389 - 1862352
Alignment:
Q  429 gatggaggttccccggggtgccaacctagttgggatgt 466  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  1862389 gatggaggttctccggggtgccaacctagttgggatgt 1862352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 466
Target Start/End: Original strand, 980935 - 980972
Alignment:
Q  429 gatggaggttccccggggtgccaacctagttgggatgt 466  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  980935 gatggaggttctccggagtgccaacctagttgggatgt 980972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 466
Target Start/End: Original strand, 12163411 - 12163448
Alignment:
Q  429 gatggaggttccccggggtgccaacctagttgggatgt 466  Q
    |||||||||| |||| ||||||||||||||||||||||    
T  12163411 gatggaggtttcccgaggtgccaacctagttgggatgt 12163448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 466
Target Start/End: Original strand, 37375025 - 37375062
Alignment:
Q  429 gatggaggttccccggggtgccaacctagttgggatgt 466  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  37375025 gatgggggttcctcggggtgccaacctagttgggatgt 37375062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 429 - 466
Target Start/End: Complemental strand, 19054447 - 19054410
Alignment:
Q  429 gatggaggttccccggggtgccaacctagttgggatgt 466  Q
    ||||||||||||||||||||||||||||||||||||||    
T  19054447 gatggaggttccccggggtgccaacctagttgggatgt 19054410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 429 - 466
Target Start/End: Complemental strand, 18332763 - 18332726
Alignment:
Q  429 gatggaggttccccggggtgccaacctagttgggatgt 466  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  18332763 gatggaggttctccggggtgccaacctagttgggatgt 18332726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 429 - 466
Target Start/End: Complemental strand, 34528981 - 34528944
Alignment:
Q  429 gatggaggttccccggggtgccaacctagttgggatgt 466  Q
    |||||||||| |||||||||||||||||||||||||||    
T  34528981 gatggaggtttcccggggtgccaacctagttgggatgt 34528944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 82 - 126
Target Start/End: Complemental strand, 39624928 - 39624884
Alignment:
Q  82 attagatagaataagaaagggtgagaagttataagatatgtgaga 126  Q
    ||||||||||||||||||||||||||| |||||  ||||||||||    
T  39624928 attagatagaataagaaagggtgagaaattatactatatgtgaga 39624884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 466
Target Start/End: Complemental strand, 10423863 - 10423826
Alignment:
Q  429 gatggaggttccccggggtgccaacctagttgggatgt 466  Q
    |||||||||| | |||||||||||||||||||||||||    
T  10423863 gatggaggtttctcggggtgccaacctagttgggatgt 10423826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 466
Target Start/End: Complemental strand, 16816296 - 16816259
Alignment:
Q  429 gatggaggttccccggggtgccaacctagttgggatgt 466  Q
    ||||||||||||||| || |||||||||||||||||||    
T  16816296 gatggaggttccccgaggcgccaacctagttgggatgt 16816259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 466
Target Start/End: Original strand, 41917094 - 41917131
Alignment:
Q  429 gatggaggttccccggggtgccaacctagttgggatgt 466  Q
    ||||| ||||| ||||||||||||||||||||||||||    
T  41917094 gatgggggttctccggggtgccaacctagttgggatgt 41917131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 114
Target Start/End: Original strand, 22911349 - 22911381
Alignment:
Q  82 attagatagaataagaaagggtgagaagttata 114  Q
    ||||||||||||||||||||| |||||||||||    
T  22911349 attagatagaataagaaagggcgagaagttata 22911381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 429 - 466
Target Start/End: Complemental strand, 1556 - 1519
Alignment:
Q  429 gatggaggttccccggggtgccaacctagttgggatgt 466  Q
    |||||||||| |||||||||||||||||||||||||||    
T  1556 gatggaggtttcccggggtgccaacctagttgggatgt 1519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 429 - 466
Target Start/End: Original strand, 16290872 - 16290909
Alignment:
Q  429 gatggaggttccccggggtgccaacctagttgggatgt 466  Q
    |||||||||| |||||||||||||||||||||||||||    
T  16290872 gatggaggtttcccggggtgccaacctagttgggatgt 16290909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 428 - 466
Target Start/End: Original strand, 29840876 - 29840914
Alignment:
Q  428 tgatggaggttccccggggtgccaacctagttgggatgt 466  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  29840876 tgatggaggtttctcggggtgccaacctagttgggatgt 29840914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 466
Target Start/End: Complemental strand, 18036878 - 18036841
Alignment:
Q  429 gatggaggttccccggggtgccaacctagttgggatgt 466  Q
    |||||||||||| |||||||||||| ||||||||||||    
T  18036878 gatggaggttcctcggggtgccaacatagttgggatgt 18036841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 466
Target Start/End: Original strand, 19742058 - 19742095
Alignment:
Q  429 gatggaggttccccggggtgccaacctagttgggatgt 466  Q
    |||||||| | |||||||||||||||||||||||||||    
T  19742058 gatggaggcttcccggggtgccaacctagttgggatgt 19742095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 466
Target Start/End: Original strand, 26867474 - 26867511
Alignment:
Q  429 gatggaggttccccggggtgccaacctagttgggatgt 466  Q
    |||||||||| |||| ||||||||||||||||||||||    
T  26867474 gatggaggtttcccgaggtgccaacctagttgggatgt 26867511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 466
Target Start/End: Original strand, 43856134 - 43856171
Alignment:
Q  429 gatggaggttccccggggtgccaacctagttgggatgt 466  Q
    |||||||||||  |||||||||||||||||||||||||    
T  43856134 gatggaggttctgcggggtgccaacctagttgggatgt 43856171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 429 - 466
Target Start/End: Complemental strand, 40926523 - 40926486
Alignment:
Q  429 gatggaggttccccggggtgccaacctagttgggatgt 466  Q
    |||||||||| |||||||||||||||||||||||||||    
T  40926523 gatggaggtttcccggggtgccaacctagttgggatgt 40926486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 113
Target Start/End: Complemental strand, 29456800 - 29456769
Alignment:
Q  82 attagatagaataagaaagggtgagaagttat 113  Q
    ||||||||||||||||||||||||||||||||    
T  29456800 attagatagaataagaaagggtgagaagttat 29456769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 113
Target Start/End: Complemental strand, 43565592 - 43565561
Alignment:
Q  82 attagatagaataagaaagggtgagaagttat 113  Q
    ||||||||||||||||||||||||||||||||    
T  43565592 attagatagaataagaaagggtgagaagttat 43565561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 466
Target Start/End: Original strand, 1490670 - 1490707
Alignment:
Q  429 gatggaggttccccggggtgccaacctagttgggatgt 466  Q
    ||||||||||| |||||||| |||||||||||||||||    
T  1490670 gatggaggttctccggggtgacaacctagttgggatgt 1490707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0437 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0437
Description:

Target: scaffold0437; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 466
Target Start/End: Original strand, 11430 - 11467
Alignment:
Q  429 gatggaggttccccggggtgccaacctagttgggatgt 466  Q
    |||||||| | |||||||||||||||||||||||||||    
T  11430 gatggagggttcccggggtgccaacctagttgggatgt 11467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 466
Target Start/End: Original strand, 2310 - 2347
Alignment:
Q  429 gatggaggttccccggggtgccaacctagttgggatgt 466  Q
    |||||||| | |||||||||||||||||||||||||||    
T  2310 gatggagggttcccggggtgccaacctagttgggatgt 2347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 466
Target Start/End: Complemental strand, 2259459 - 2259422
Alignment:
Q  429 gatggaggttccccggggtgccaacctagttgggatgt 466  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  2259459 gatggaggtttcccgggatgccaacctagttgggatgt 2259422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 466
Target Start/End: Original strand, 15614753 - 15614790
Alignment:
Q  429 gatggaggttccccggggtgccaacctagttgggatgt 466  Q
    |||||||| | |||||||||||||||||||||||||||    
T  15614753 gatggagggttcccggggtgccaacctagttgggatgt 15614790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 466
Target Start/End: Complemental strand, 21711600 - 21711563
Alignment:
Q  429 gatggaggttccccggggtgccaacctagttgggatgt 466  Q
    |||||||| | |||||||||||||||||||||||||||    
T  21711600 gatggagggttcccggggtgccaacctagttgggatgt 21711563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 466
Target Start/End: Original strand, 28637634 - 28637671
Alignment:
Q  429 gatggaggttccccggggtgccaacctagttgggatgt 466  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  28637634 gatgggggttcctcggggtgccaacctagttgggatgt 28637671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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