View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13866_low_8 (Length: 448)
Name: NF13866_low_8
Description: NF13866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13866_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Complemental strand, 38851850 - 38851401
Alignment:
| Q |
1 |
aattgaagctcttttctaatggccaactaaacaaaatatcttagttcttgcatccatcacatggtgaaggataaaattacaatttttgttagtttaatgg |
100 |
Q |
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| T |
38851850 |
aattgaagctcttttctaatggtcaactaaacaaaataccttagttcttgcatccatcacatgttgaaggataaaattacaatttttgttagtttaatgg |
38851751 |
T |
|
| Q |
101 |
actagcaatttgaaaatccctaaagaaatagacagacctcgagagaaactaaagagcattgctatacggtgcgacatgcactccaaagaaaatatgtgaa |
200 |
Q |
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| T |
38851750 |
actagcaatttgaaaattcctaaaggaatagacagacctcgagagaaactaaagagcattgctatacggtgcgacatgcactccaaagaaaatatgtgaa |
38851651 |
T |
|
| Q |
201 |
ggatagaaatggtattcacaaatactaactgctcatttacttgtctcgtcgtttttcgtcgccactttttcgtaccagagcaatttccgacattaaatca |
300 |
Q |
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| T |
38851650 |
ggatagaaatggtattcacaaatactaactgctcatttacttgtctcgttgtttttcgtcgccactttttcgtaccagagtaatttctgaaattaaatca |
38851551 |
T |
|
| Q |
301 |
tcatagaaaatcctagatgaagacataggacatgcatgtttactagtttatactattagc---ataggctgactaatctata----nnnnnnnaataaac |
393 |
Q |
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| T |
38851550 |
tcatagaaaatcctagatgaagacataggacatgcatgttaactagtttatactattagcattataggctgactaatctatatttttttttttaataaac |
38851451 |
T |
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| Q |
394 |
ttattataggtacaaaacatactagggtaatttatactaattagtttttt |
443 |
Q |
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| T |
38851450 |
ttattataggtacaaagcatactagggtaatttatactatttagtttttt |
38851401 |
T |
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Back To:
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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 270
Target Start/End: Original strand, 35558472 - 35558559
Alignment:
| Q |
185 |
aaagaaaatatgtgaaggatagaaatggtattca--caaatactaactgctcatttacttgtctcgtcgtttttcgtcgccacttttt |
270 |
Q |
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|||||||||| |||||| ||| |||||||||||| ||||||||||| || |||||| || | |||||||||||||| ||| |||| |
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| T |
35558472 |
aaagaaaataggtgaagaataaaaatggtattcactcaaatactaaccactaatttacatgcttagtcgtttttcgtcggcacatttt |
35558559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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