View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13867_high_12 (Length: 369)
Name: NF13867_high_12
Description: NF13867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13867_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 7 - 361
Target Start/End: Original strand, 14433403 - 14433757
Alignment:
| Q |
7 |
attgaaacatccttgaatgcaatatattaattgcatttttgtattcctacaaaataaaattaaacacattgttagttaaccttccttgcatggtcggccc |
106 |
Q |
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| T |
14433403 |
attgaaacatccttgaatgcaatatattaattgcatttttgtattcctacaaaataaaattaaacgcattgttagttaaccttccttgcatggtcggccc |
14433502 |
T |
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| Q |
107 |
aataaattttatttgtagatgagacctaaaacatattttaatatacgagacatttttagtctgtatacgagaccattttgtttataagaaagaaagatca |
206 |
Q |
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| T |
14433503 |
agtaaattttatttgtaggtgagacctaaaacatattttaatatacgagacatttttagtctgtatacgagaccattttgtttataagaaagaaagatca |
14433602 |
T |
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| Q |
207 |
ccgagtaataaggagtaggagaaacaacattgatagggtgatcagggacatataaaggagacaaagcaaacaaagcagcttggaagagttgagaagagcc |
306 |
Q |
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| T |
14433603 |
ccgagtaataaggagtaggagaaataacattgatagggtgatcagggacatctaaaggagacaaagcgaacaaagcagcttggaagagttgagaagagcc |
14433702 |
T |
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| Q |
307 |
atgtccaacaactatggatttatcgttggtcacagcatgtccaactaaatgatga |
361 |
Q |
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| T |
14433703 |
atttccaacaactatgtatttatctttggtcacagcatttccaactaaatgatga |
14433757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 14443011 - 14443064
Alignment:
| Q |
198 |
gaaagatcaccgagtaataaggagtaggagaaacaacattgatagggtgatcag |
251 |
Q |
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| T |
14443011 |
gaaagattaccgagtaataaggagcagcagcaacaacattgataggttgatcag |
14443064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 173
Target Start/End: Original strand, 20626818 - 20626885
Alignment:
| Q |
105 |
ccaataaattttatttgtagatgagacctaaaacatattttaatatacgagacatttttagtctgtata |
173 |
Q |
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| T |
20626818 |
ccaataaattttatttgtagacgagctttaaaacaaattttaa-atatgaggcttttttagtctgtata |
20626885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 105 - 193
Target Start/End: Original strand, 32598355 - 32598443
Alignment:
| Q |
105 |
ccaataaattttatttgtagatgagacctaaaacatattttaatatacgagacatttttagtctgtatacgagaccattttgtttataa |
193 |
Q |
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| T |
32598355 |
ccaataaattttatttgtagaagaggtctaaaacaaattttaatatatgaggcatttttagtctatatatgaagcctttttgtttataa |
32598443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 151
Target Start/End: Complemental strand, 23099366 - 23099316
Alignment:
| Q |
101 |
cggcccaataaattttatttgtagatgagacctaaaacatattttaatata |
151 |
Q |
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| T |
23099366 |
cggcccaataaattttattcgtatatgtgtcctaaaacaaattttaatata |
23099316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 149
Target Start/End: Complemental strand, 21090503 - 21090454
Alignment:
| Q |
100 |
tcggcccaataaattttatttgtagatgagacctaaaacatattttaata |
149 |
Q |
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| T |
21090503 |
tcggcccaataatttttatttgtagatgaggtctaaatcaaattttaata |
21090454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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