View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13867_high_20 (Length: 281)
Name: NF13867_high_20
Description: NF13867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13867_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 31547152 - 31547418
Alignment:
| Q |
1 |
ccggtcgcctgttgaaccactctttgaaagacgctcgctaccagcaaggtcaattagattcagaacaccttgtacttgttggtcagtactctggcagcga |
100 |
Q |
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| T |
31547152 |
ccggtcaccggttgaaccactctttgaaagacgctcgctaccagcaaggtcaattagattcagaacaccttgtacttgttggtcagtactctggcagaga |
31547251 |
T |
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| Q |
101 |
aataaattaggttgcattatgatgcatttcattgttgtgactatggaaagattgagatgggaatggagaatagatataaaatatagtttagattatcatc |
200 |
Q |
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| T |
31547252 |
aataatttaggttgaattatgatgcatgtcattgttgtgattatgg-aagattga---gggaatgtagaatagatataaaatgcagttttgactattatc |
31547347 |
T |
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| Q |
201 |
ttaagagaaacatcatcaatacctcatttacaccatatattcgaagagtgaacacgaaatgacttcttgatgat |
274 |
Q |
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| T |
31547348 |
ttaagagaaa---catgaatacctcatttacaccatatattcgaagggtgaacacgaaatgacttcttgatgat |
31547418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 2 - 97
Target Start/End: Complemental strand, 34652246 - 34652151
Alignment:
| Q |
2 |
cggtcgcctgttgaaccactctttgaaagacgctcgctaccagcaaggtcaattagattcagaacaccttgtacttgttggtcagtactctggcag |
97 |
Q |
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| T |
34652246 |
cggtctccagttgagccactccttgaaagacgctcactcccagcaagatcaatgagatttagaacaccttgtacttgttggtccgtgctctggcag |
34652151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 219 - 270
Target Start/End: Complemental strand, 34651885 - 34651834
Alignment:
| Q |
219 |
atacctcatttacaccatatattcgaagagtgaacacgaaatgacttcttga |
270 |
Q |
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| T |
34651885 |
atacctcatttacaccgtatattcgaagagtgaatacgaaatgacttcttga |
34651834 |
T |
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