View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13867_high_22 (Length: 256)
Name: NF13867_high_22
Description: NF13867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13867_high_22 |
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Alignment Details
Target: chr6 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 138 - 240
Target Start/End: Original strand, 19044775 - 19044876
Alignment:
| Q |
138 |
tatacacccttagtaacacaacaggacgcataactgtgcttcatcccccaagcaagtagtccgaaaacagcaactgatagaacaaaaaactccacaccat |
237 |
Q |
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| T |
19044775 |
tatacacccttagtaacacaacaggacgcataactgtgcttcatcccccaagcaagtagtccg-aaacaacaactgatagaacaaaaaactccacaccat |
19044873 |
T |
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| Q |
238 |
tag |
240 |
Q |
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||| |
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| T |
19044874 |
tag |
19044876 |
T |
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Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 10 - 103
Target Start/End: Original strand, 19044645 - 19044738
Alignment:
| Q |
10 |
ttattctcatcggaatatgcaaggtgcaaaagactgcggaagggaatcaaatataatacatacggcaccgcatatatacagaataccgcaaccc |
103 |
Q |
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| T |
19044645 |
ttattctcgtcggaatacgcaaggtgcaaaagaccgcggaagggaatcaaatataatacatacggcaccgcatatatacggaataccgcaaccc |
19044738 |
T |
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