View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13867_high_24 (Length: 249)
Name: NF13867_high_24
Description: NF13867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13867_high_24 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 28594273 - 28594026
Alignment:
| Q |
1 |
ataaaatattttatttcgttaaatcgattttatattcctaatgatattgattttgtggaaatttattatgcaggtagatcacggaaacaacgtgataagg |
100 |
Q |
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| T |
28594273 |
ataaaatattttatttcgttaaatcgattttatattcctaatgatattgattttgtggaaatttattatgcaggtagatcacggaaacaacttgataagg |
28594174 |
T |
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| Q |
101 |
aagaaagcttgtgtaagaagccaaacgtaaatgaagaatatctggaaacatttagaacaaagtcttatattgaaatatgcaacaaagcacaagggcaatt |
200 |
Q |
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| T |
28594173 |
aagaaagcttgtgtaagaagccaaacgtaaatgaagaatatctggaaacatttagaacaaagtcttatattgaaatatgcaacaaagcacaagggcaatt |
28594074 |
T |
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| Q |
201 |
tgggaagacaatcaacaccaaaagactctcttcatattcttcgacatc |
248 |
Q |
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| T |
28594073 |
tgggaagacaatcaacaccaaaagactctcttcatcttgttcaacatc |
28594026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 47 - 231
Target Start/End: Original strand, 8357364 - 8357548
Alignment:
| Q |
47 |
ttgattttgtggaaatttattatgcaggtagatcacggaaacaacgtgataaggaagaaagcttgtgtaagaagccaaacgtaaatgaagaatatctgga |
146 |
Q |
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|||||||||||||||| |||| ||||||||||||||||||||| || ||||||| || |||||||||| |||| |||| ||||||||||||||| | || |
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| T |
8357364 |
ttgattttgtggaaataaattaagcaggtagatcacggaaacaatgtcataaggatgatagcttgtgtaggaagtcaaatgtaaatgaagaatattttga |
8357463 |
T |
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| Q |
147 |
aacatttagaacaaagtcttatattgaaatatgcaacaaagcacaagggcaatttgggaagacaatcaacaccaaaagactctct |
231 |
Q |
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| T |
8357464 |
agcatttagaacaaagtcttatattgaaatatgcaacaaagcaaaagtgcaatttgagaagacaatcagcaccaaaagactctct |
8357548 |
T |
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