View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13867_high_8 (Length: 414)

Name: NF13867_high_8
Description: NF13867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13867_high_8
NF13867_high_8
[»] chr7 (5 HSPs)
chr7 (16-402)||(12421175-12421561)
chr7 (292-387)||(24203803-24203898)
chr7 (295-398)||(21601437-21601540)
chr7 (292-387)||(21604984-21605079)
chr7 (292-371)||(21611250-21611329)
[»] chr3 (8 HSPs)
chr3 (292-400)||(19612234-19612342)
chr3 (292-398)||(19603712-19603818)
chr3 (292-371)||(19617289-19617368)
chr3 (292-398)||(19646624-19646730)
chr3 (318-398)||(19609604-19609683)
chr3 (292-371)||(19593566-19593645)
chr3 (138-195)||(32150679-32150737)
chr3 (314-398)||(19653596-19653680)


Alignment Details
Target: chr7 (Bit Score: 375; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 16 - 402
Target Start/End: Original strand, 12421175 - 12421561
Alignment:
Q  16 caacaacaagtgagtatgccgcaaatataggaatttgctccgatagcgatgcacctttgggggcattgatcacatggcaccggaccaaggcaattaacag 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12421175 caacaacaagtgagtatgccgcaaatataggaatttgctccgatagcgatgcacctttgggggcattgatcacatggcaccggaccaaggcaattaacag 12421274  T
Q  116 cacctgaagggtgcaaacttgatggtgttggtcctgctaaaaaattaaaattcacaatttcaaaactcattttaagctatggatttatatgttaataatg 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  12421275 cacctgaagggtgcaaacttgatggtgttggtcctgctaaaaaattaaaattcacaatttcaaaactcattttaagctatagatttatatgttaataatg 12421374  T
Q  216 atgtacaagattataacaaattgtagaattaagcaaaaactttcctttaaagaaagaaagaatattgtttgttaattttcttacccgaagccaggacaaa 315  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12421375 atgtacaagattataacaaattgttgaattaagcaaaaactttcctttaaagaaagaaagaatattgtttgttaattttcttacccgaagccaggacaaa 12421474  T
Q  316 cgcaatgcataaaagtccgaaaagaaaagattggaaaaagtgtgttgccattttttgtgaagatttcatcttagagctctattttat 402  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12421475 cgcaatgcataaaagtccgaaaagaaaagatcggaaaaagtgtgttgccattttttgtgaagatttcatcttagagctctattttat 12421561  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 292 - 387
Target Start/End: Original strand, 24203803 - 24203898
Alignment:
Q  292 tttcttacccgaagccaggacaaacgcaatgcataaaagtccgaaaagaaaagattggaaaaagtgtgttgccattttttgtgaagatttcatctt 387  Q
    ||||||||||||||||||||||| |  |||||| |||||||| || |||||||||||| ||| |||| || |||||||||||||| |||| |||||    
T  24203803 tttcttacccgaagccaggacaaccataatgcaaaaaagtcccaagagaaaagattggcaaatgtgtttttccattttttgtgaaaattttatctt 24203898  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 295 - 398
Target Start/End: Complemental strand, 21601540 - 21601437
Alignment:
Q  295 cttacccgaagccaggacaaacgcaatgcataaaagtccgaaaagaaaagattggaaaaagtgtgttgccattttttgtgaagatttcatcttagagctc 394  Q
    ||||||||||||||| || |||||||||||||||||||| || |||||| ||||  |||  | | ||||||||| |||||||||||  |||||| |||||    
T  21601540 cttacccgaagccagaaccaacgcaatgcataaaagtcccaagagaaaatattgagaaatatattttgccatttcttgtgaagattgtatcttaaagctc 21601441  T
Q  395 tatt 398  Q
    ||||    
T  21601440 tatt 21601437  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 292 - 387
Target Start/End: Complemental strand, 21605079 - 21604984
Alignment:
Q  292 tttcttacccgaagccaggacaaacgcaatgcataaaagtccgaaaagaaaagattggaaaaagtgtgttgccattttttgtgaagatttcatctt 387  Q
    ||||||||| |||||  | || ||||||||||| |||||||| || |||||| ||||| ||| |||  |||||||||||||||||||||| |||||    
T  21605079 tttcttacctgaagcttgaaccaacgcaatgcacaaaagtcccaagagaaaatattgggaaatgtggtttgccattttttgtgaagattttatctt 21604984  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 292 - 371
Target Start/End: Complemental strand, 21611329 - 21611250
Alignment:
Q  292 tttcttacccgaagccaggacaaacgcaatgcataaaagtccgaaaagaaaagattggaaaaagtgtgttgccatttttt 371  Q
    ||||||||| ||||  |||| |||| ||||||| |||| ||| || |||||| ||||||||| |||| ||||||||||||    
T  21611329 tttcttacctgaagataggagaaacacaatgcacaaaactcccaagagaaaatattggaaaatgtgttttgccatttttt 21611250  T

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Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 292 - 400
Target Start/End: Complemental strand, 19612342 - 19612234
Alignment:
Q  292 tttcttacccgaagccaggacaaacgcaatgcataaaagtccgaaaagaaaagattggaaaaagtgtgttgccattttttgtgaagatttcatcttagag 391  Q
    ||||||||| ||||| || || ||||||||||| |||| ||| |||||| || ||||| ||| |||| |||||||||||||||||||||| |||||||||    
T  19612342 tttcttacctgaagctagaaccaacgcaatgcagaaaattcccaaaagacaatattgggaaatgtgttttgccattttttgtgaagattttatcttagag 19612243  T
Q  392 ctctatttt 400  Q
     ||||||||    
T  19612242 ttctatttt 19612234  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 292 - 398
Target Start/End: Complemental strand, 19603818 - 19603712
Alignment:
Q  292 tttcttacccgaagccaggacaaacgcaatgcataaaagtccgaaaagaaaagattggaaaaagtgtgttgccattttttgtgaagatttcatcttagag 391  Q
    |||||||||| |||| || || ||| |||||||||||| ||| || |||||| ||||  ||| |||| |||||||||||||| || |||| ||||||||     
T  19603818 tttcttacccaaagctagaaccaacacaatgcataaaattcccaagagaaaatattgcgaaatgtgttttgccattttttgttaaaattttatcttagaa 19603719  T
Q  392 ctctatt 398  Q
    |||||||    
T  19603718 ctctatt 19603712  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 292 - 371
Target Start/End: Complemental strand, 19617368 - 19617289
Alignment:
Q  292 tttcttacccgaagccaggacaaacgcaatgcataaaagtccgaaaagaaaagattggaaaaagtgtgttgccatttttt 371  Q
    ||||||||||||||| || || |||||||||||||||| ||| || |||||| |||||||||  | | ||||||||||||    
T  19617368 tttcttacccgaagctagaaccaacgcaatgcataaaactccaaagagaaaatattggaaaatatattttgccatttttt 19617289  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 292 - 398
Target Start/End: Complemental strand, 19646730 - 19646624
Alignment:
Q  292 tttcttacccgaagccaggacaaacgcaatgcataaaagtccgaaaagaaaagattggaaaaagtgtgttgccattttttgtgaagatttcatcttagag 391  Q
    ||||||||| ||||| || || |||||||||||||||| | | || ||| |  | ||||||| || | |||||||||||| ||||||||| |||||| ||    
T  19646730 tttcttacctgaagctagaaccaacgcaatgcataaaattgctaagagacagtactggaaaatgttttttgccattttttatgaagattttatcttatag 19646631  T
Q  392 ctctatt 398  Q
    |||||||    
T  19646630 ctctatt 19646624  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 398
Target Start/End: Complemental strand, 19609683 - 19609604
Alignment:
Q  318 caatgcataaaagtccgaaaagaaaagattggaaaaagtgtgttgccattttttgtgaagatttcatcttagagctctatt 398  Q
    |||||||||||| ||| || ||| || | ||| ||| |||| ||||||||||| |||||||||| ||||||||||||||||    
T  19609683 caatgcataaaattcccaagagacaatactgggaaatgtgttttgccattttt-gtgaagattttatcttagagctctatt 19609604  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 292 - 371
Target Start/End: Complemental strand, 19593645 - 19593566
Alignment:
Q  292 tttcttacccgaagccaggacaaacgcaatgcataaaagtccgaaaagaaaagattggaaaaagtgtgttgccatttttt 371  Q
    ||||||||| ||||| || || |||||||||||||||| ||| || |||||| ||||| ||| ||||  |||||||||||    
T  19593645 tttcttacctgaagctagaaccaacgcaatgcataaaattcctaagagaaaatattgggaaatgtgtcctgccatttttt 19593566  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 195
Target Start/End: Original strand, 32150679 - 32150737
Alignment:
Q  138 tggtgttggtcctgctaaaaaattaaaattcacaatttcaaaactcat-tttaagctat 195  Q
    ||||||||||||||| | |||| ||||||||||| ||||||||| ||| ||||||||||    
T  32150679 tggtgttggtcctgccacaaaaataaaattcacattttcaaaacgcatatttaagctat 32150737  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 398
Target Start/End: Complemental strand, 19653680 - 19653596
Alignment:
Q  314 aacgcaatgcataaaagtccgaaaagaaaagattggaaaaagtgtgttgccattttttgtgaagatttcatcttagagctctatt 398  Q
    |||||||||||||||| | | || ||| |  | ||| ||| |||| |||||||||||| ||||||||| |||||| |||||||||    
T  19653680 aacgcaatgcataaaattgccaagagacagtactgggaaatgtgttttgccattttttatgaagattttatcttatagctctatt 19653596  T

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