View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13867_low_13 (Length: 363)
Name: NF13867_low_13
Description: NF13867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13867_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 8 - 345
Target Start/End: Original strand, 47193703 - 47194040
Alignment:
| Q |
8 |
agagatgaacgtgatagttctgctttttcaagaataagagggacaagaggttatatggcacctgaatgggtttataatcttcgtattacgtcaaaagttg |
107 |
Q |
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| T |
47193703 |
agagatgaacgtgatagttctgctttttcaagaataagagggacaagaggttatatggcacctgaatgggtttataatcttcgtattacttcaaaagttg |
47193802 |
T |
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| Q |
108 |
atgtttatagttatgggattgttttgcttgaaatggtgagtggaaaaagtccaatggaaattcatagtgttgttgataatagtggaggtttggagcatca |
207 |
Q |
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| T |
47193803 |
atgtttatagttatgggattgttttgcttgaaatggtgagtggaaaaagtccaatggaaattcatagtgttgttgataatagtggaggtttggagcatca |
47193902 |
T |
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| Q |
208 |
tcatcgaatggtgagttgggtgatggaaaaggtgaaaagtgcacctacgactatgttttggattgaagagattgttgatggtaatttggaaggaaaatat |
307 |
Q |
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| T |
47193903 |
tcatcgaatggtgagttgggtgatggaaaaggtgaaaagtgcacctacgactatgttttggattgaagagattgttgatggtaatttggaaggaaaatat |
47194002 |
T |
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| Q |
308 |
gatgttaatcaggttgagaatttggttaaagtggcttt |
345 |
Q |
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| T |
47194003 |
gatgttaatcaggttgagaatttggttaaagtggcttt |
47194040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 123
Target Start/End: Complemental strand, 26698590 - 26698512
Alignment:
| Q |
45 |
gagggacaagaggttatatggcacctgaatgggtttataatcttcgtattacgtcaaaagttgatgtttatagttatgg |
123 |
Q |
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| T |
26698590 |
gagggacaagaggttacatggcacctgaatgggttttcaacatgcaaattacttcaaaagtggatgtttatagctatgg |
26698512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 123
Target Start/End: Complemental strand, 26733753 - 26733675
Alignment:
| Q |
45 |
gagggacaagaggttatatggcacctgaatgggtttataatcttcgtattacgtcaaaagttgatgtttatagttatgg |
123 |
Q |
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| T |
26733753 |
gagggacaagaggttacatggcacctgaatgggttttcaacatgcaaattacttcaaaagtggatgtttatagctatgg |
26733675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 45 - 80
Target Start/End: Complemental strand, 26750914 - 26750879
Alignment:
| Q |
45 |
gagggacaagaggttatatggcacctgaatgggttt |
80 |
Q |
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| T |
26750914 |
gagggacaagaggttacatggcacctgaatgggttt |
26750879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 133
Target Start/End: Original strand, 39132397 - 39132486
Alignment:
| Q |
44 |
agagggacaagaggttatatggcacctgaatgggtttataatcttcgtattacgtcaaaagttgatgtttatagttatgggattgttttg |
133 |
Q |
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| T |
39132397 |
agaggaacaagaggatatatggctcctgaatgggttttcaatttaccaataacatctaaagtggatgtttatagttatgggattgttttg |
39132486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 76
Target Start/End: Complemental strand, 23466655 - 23466619
Alignment:
| Q |
40 |
aataagagggacaagaggttatatggcacctgaatgg |
76 |
Q |
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| T |
23466655 |
aataagaggaacaagaggttatatggcaccagaatgg |
23466619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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