View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13867_low_14 (Length: 341)
Name: NF13867_low_14
Description: NF13867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13867_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 19 - 303
Target Start/End: Original strand, 2743518 - 2743803
Alignment:
| Q |
19 |
actagacctcttaagatgaatgtttattacactgatatcccttttgttactgaaattacatcaatatcctttactttggatgctgctctttacctctcaa |
118 |
Q |
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| T |
2743518 |
actagacctcttaagatgaatgtttattacactgacatcccttttgttactgaaattacatcaatatcctttactttggatgctgctctttacctctcaa |
2743617 |
T |
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| Q |
119 |
caggcttctttgtttaaagtataacacaccatgaagcattgacacaaacacgatattgatgctgatacgtagacactggtaaataatttacgaaaataga |
218 |
Q |
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| T |
2743618 |
caggcttctttgtttaaagtataacacaccatgaagcattgacacagacacgatattgatgctgatacataaacactggtaaataatttacgaaaataga |
2743717 |
T |
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| Q |
219 |
agtgattgaatgtgacaatatgcgtctatgtcaaatactgacacatgttagatactactagacaca-ccttcaatctgtagtgttt |
303 |
Q |
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| T |
2743718 |
agtgattgaatgtgactatatgtgtctatgtcaaataccgacacaagttagatactactagacacagccttcaatttgtagtgttt |
2743803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 294 - 331
Target Start/End: Original strand, 2743809 - 2743846
Alignment:
| Q |
294 |
tgtagtgtttgtgctatatagattgtacacaccccttt |
331 |
Q |
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| T |
2743809 |
tgtagtgtttgtgctatatagattgtacacaccccttt |
2743846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 319
Target Start/End: Original strand, 16315743 - 16315787
Alignment:
| Q |
275 |
actagacacaccttcaatctgtagtgtttgtgctatatagattgt |
319 |
Q |
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| T |
16315743 |
actagacacaccttcaatctgaagtgttggttctatatagattgt |
16315787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 199 - 250
Target Start/End: Original strand, 23966050 - 23966101
Alignment:
| Q |
199 |
aaataatttacgaaaatagaagtgattgaatgtgacaatatgcgtctatgtc |
250 |
Q |
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| T |
23966050 |
aaataatttacgaaaatgaaagtgattcaatgtaacaatatgtgtctatgtc |
23966101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 240
Target Start/End: Complemental strand, 7897290 - 7897236
Alignment:
| Q |
186 |
cgtagacactggtaaataatttacgaaaatagaagtgattgaatgtgacaatatg |
240 |
Q |
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| T |
7897290 |
cgtagacactgataaataattttagacaatagaagtgattgaacgtaacaatatg |
7897236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 231
Target Start/End: Original strand, 22556234 - 22556278
Alignment:
| Q |
186 |
cgtagacactggtaaataatttacgaaaatagaagtgattgaatgt |
231 |
Q |
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| T |
22556234 |
cgtagacacaggtaa-taatttaagaaaatagaagtgattgaatgt |
22556278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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