View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13867_low_15 (Length: 331)
Name: NF13867_low_15
Description: NF13867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13867_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 36773448 - 36773763
Alignment:
| Q |
1 |
taaatattaaagcagccactggtaagtggtaagtgatgatgaggaagatttctgggcagccaacaatttagactatatgataaaaatcgaatgatccaga |
100 |
Q |
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| T |
36773448 |
taaatattaaagcagccactggtaagtggtaagtgatgatgaggaagatttctgggcagccaacaatttagactatatgataaaaatcgaatgatccaga |
36773547 |
T |
|
| Q |
101 |
tttcaacaacaatgtttaaacnnnnnnnnnnnnnnccaactgaaatttgagtcttatctgacatgctaactacatgcagtagcaatctgcacctgatccg |
200 |
Q |
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| T |
36773548 |
tttcaacaacaatgtttaaacaaaaataaaaaaa-ccaactgaaatttgagtcttatctgacatgctaactacatgcagtagcaatctgcacctgatccg |
36773646 |
T |
|
| Q |
201 |
aattcaaggttcttatgttgggggtggttgtttgaatatatatatgtttactagattgctcagtattctttggtaaattgaaaaacatttactcaaacca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
36773647 |
aattcaaggttcttatgttgggggtggttgtttgaatgtatataggtttactagattgctcagtattctttggtaaattgaaaaacatatactcaaacca |
36773746 |
T |
|
| Q |
301 |
aactagctctcaaaact |
317 |
Q |
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||||||||||||||||| |
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| T |
36773747 |
aactagctctcaaaact |
36773763 |
T |
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