View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13867_low_17 (Length: 303)
Name: NF13867_low_17
Description: NF13867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13867_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 19 - 286
Target Start/End: Complemental strand, 4646666 - 4646399
Alignment:
| Q |
19 |
aacttcactatcaaatcttccatattatgctaaacacggatttgggtatgatcgatcatctttatctttagttttcatactctaactttgcattttgttt |
118 |
Q |
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| T |
4646666 |
aacttcactatcaaatcttccatattatgctaaacacggatttgggtatgatcgatcatctttatctttagttttcatactctaactttgcattttgttt |
4646567 |
T |
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| Q |
119 |
tactttttgtatatatatgctatttaacacatatatataatgaattgatagggtggaaccatacaatgatacattatttaatcaatgggttgatcttgga |
218 |
Q |
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| T |
4646566 |
tactttttgtatatatatgctatttaacacatatatataatgaattgatagggtggaaccatacaatgatacattatttaatcaatgggttgatcttgga |
4646467 |
T |
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| Q |
219 |
acagccccagcacttcctgaatctgaaaaattgtacaataaattgttgtctcttggcatcaagattgc |
286 |
Q |
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| T |
4646466 |
acagcaccagcacttcctgaatctaaaaaattgtacaataaattgttgtctcttggtatcaagattgc |
4646399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 23699176 - 23699227
Alignment:
| Q |
19 |
aacttcactatcaaatcttccatattatgctaaacacggatttgggtatgat |
70 |
Q |
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| T |
23699176 |
aacttccctatcaaatcttccatattatgctaaacacggatttgggtatgat |
23699227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 290
Target Start/End: Complemental strand, 41872765 - 41872639
Alignment:
| Q |
164 |
tgatagggtggaaccatacaatgatacattatttaatcaatgggttgatcttggaacagccccagcacttcctgaatctgaaaaattgtacaataaattg |
263 |
Q |
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| T |
41872765 |
tgatagggtggaaccattcaatgcgacgtcgtttaatgaatgggcagaccttggcacagcaccagcactgccagaatctcaaaaactttacaataaacta |
41872666 |
T |
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| Q |
264 |
ttgtctcttggcatcaagattgcattc |
290 |
Q |
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||||||||||| |||||||||| |||| |
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| T |
41872665 |
ttgtctcttggtatcaagattgtattc |
41872639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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