View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13867_low_18 (Length: 302)
Name: NF13867_low_18
Description: NF13867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13867_low_18 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 10 - 284
Target Start/End: Complemental strand, 41853834 - 41853560
Alignment:
| Q |
10 |
gcagagatcagatgaagatccgacaatatttgacataacttatagaggaaagcatacatgttctcagggaaacaatgccattgagccatataagtcacaa |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41853834 |
gcagagatcagatgaagatccgacaatatttgacataacttatagaggaaagcatacatgttctcagggaaacaatgccattgagccatataagtcacaa |
41853735 |
T |
|
| Q |
110 |
gaaaaacaagagaaaccgcacatccataataataatattattcaccatgcacaacaatcacaagaaagctttacaaagttcagcaacaccttgactgtga |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41853734 |
gaaaaacaagagaaaccgcacatccataataataatattattcaccatgcacaacaatcacaagaaagctttacaaagttcagcaacaccttgactgtga |
41853635 |
T |
|
| Q |
210 |
aaacggataaccttggaaacgaagaaatgacatgtcctttcaccttcccttccacttcatatggatacacaacgc |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41853634 |
aaacggataaccttggaaacgaagaaatgacatgtcctttcaccttcccttccacttcatatggatacacaacgc |
41853560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University