View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13867_low_19 (Length: 298)
Name: NF13867_low_19
Description: NF13867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13867_low_19 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 47193429 - 47193726
Alignment:
| Q |
1 |
aattgatatgtggggatattgtgttgaagggaaacataggcttttggtctatgagtatatagaacatggttctttagcggagaatctatgttctaattca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47193429 |
aattgatatgtggggatattgtgttgaagggaaacataggcttttggtctatgagtatatagaacatggttctttagcggagaatctatgttctaattca |
47193528 |
T |
|
| Q |
101 |
cttgattggaataagaggtttaatgtagctgttggaacagctaaaggtttggcttatttacatgaagagtgtttggaatgggttttacattgtgatgtga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47193529 |
cttgattggaataagaggtttaatgtagctgttggaacagctaaaggtttggcttatttacatgaagagtgtttggaatgggttttacattgtgatgtga |
47193628 |
T |
|
| Q |
201 |
aacctcaaaatattttacttgacacaaattttcaaccaaaggttgctgattttggtttatcaaaactattgaatagagatgaacgtgatagttctgct |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47193629 |
aacctcaaaatattttacttgacacaaattttcaaccaaaggttgctgattttggtttatcaaaactattgaatagagatgaacgtgatagttctgct |
47193726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 9792529 - 9792698
Alignment:
| Q |
1 |
aattgatatgtggggatattgtgttgaagggaaacataggcttttggtctatgagtatatagaacatggttctttagcggagaatctatgttctaattca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||| ||||||||||| |||| ||||||||||||||||||||| |
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| T |
9792529 |
aattgatatgtggggatattgtgttgaagggaaaaatagacttttggtttatgagtatatggaacatggttcattagttgagaatctatgttctaattca |
9792628 |
T |
|
| Q |
101 |
cttgattggaataagaggtttaatgtagctgttggaacagctaaaggtttggcttatttacatgaagagt |
170 |
Q |
| |
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|||||||||||||||| ||||| ||| ||||| |||| |||||||||| |||||||||| |||||||| |
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|
| T |
9792629 |
gttgattggaataagagatttaagatagttgttgcaacaactaaaggtttcgcttatttacttgaagagt |
9792698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 210
Target Start/End: Complemental strand, 47212322 - 47212255
Alignment:
| Q |
143 |
aaaggtttggcttatttacatgaagagtgtttggaatgggttttacattgtgatgtgaaacctcaaaa |
210 |
Q |
| |
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||||||||||||||| | ||||||||||||||||| ||| |||| |||||||||||||| || ||||| |
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| T |
47212322 |
aaaggtttggcttatatccatgaagagtgtttggagtggattttgcattgtgatgtgaagccacaaaa |
47212255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 273
Target Start/End: Complemental strand, 26737138 - 26737017
Alignment:
| Q |
152 |
gcttatttacatgaagagtgtttggaatgggttttacattgtgatgtgaaacctcaaaatattttacttgacacaaattttcaaccaaaggttgctgatt |
251 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||| ||||| ||| | || || ||||| || | ||||| | ||| || ||| |||||||| |||| |
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| T |
26737138 |
gcttatttacatgaagagtgtttggagtggattttgcattgcgatataaagccgcaaaacatacttgttgactctgattatcgacctaaggttgcagatt |
26737039 |
T |
|
| Q |
252 |
ttggtttatcaaaactattgaa |
273 |
Q |
| |
|
||||||| || || |||||||| |
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| T |
26737038 |
ttggtttgtctaagctattgaa |
26737017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 192
Target Start/End: Complemental strand, 26713902 - 26713862
Alignment:
| Q |
152 |
gcttatttacatgaagagtgtttggaatgggttttacattg |
192 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||| ||||| |
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|
| T |
26713902 |
gcttatttacatgaagagtgtttggagtggattttgcattg |
26713862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 123; Significance: 3e-63; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 6 - 176
Target Start/End: Complemental strand, 6609487 - 6609317
Alignment:
| Q |
6 |
atatgtggggatattgtgttgaagggaaacataggcttttggtctatgagtatatagaacatggttctttagcggagaatctatgttctaattcacttga |
105 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| |||| ||||||||||| ||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
6609487 |
atatgtggggatattgtgttgaggggaaacataggcttctggtttatgagtatatggaacatggttcattagttgagaatctatgttctaattcacttga |
6609388 |
T |
|
| Q |
106 |
ttggaataagaggtttaatgtagctgttggaacagctaaaggtttggcttatttacatgaagagtgtttgg |
176 |
Q |
| |
|
|||||||||||| |||||||||| ||||| ||||||||||||||||| |||| |||||||||||||||||| |
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| T |
6609387 |
ttggaataagagatttaatgtagttgttgcaacagctaaaggtttggtttatgtacatgaagagtgtttgg |
6609317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 6 - 176
Target Start/End: Original strand, 6624634 - 6624804
Alignment:
| Q |
6 |
atatgtggggatattgtgttgaagggaaacataggcttttggtctatgagtatatagaacatggttctttagcggagaatctatgttctaattcacttga |
105 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| |||| |||||||||| ||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
6624634 |
atatgtggggatattgtgttgaggggaaacataggcttctggtttatgagtatacggaacatggttcattagttgagaatctatgttctaattcacttga |
6624733 |
T |
|
| Q |
106 |
ttggaataagaggtttaatgtagctgttggaacagctaaaggtttggcttatttacatgaagagtgtttgg |
176 |
Q |
| |
|
|||||||||||| |||||||||| ||||| ||||||||||||||||| |||| |||||||||||||||||| |
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|
| T |
6624734 |
ttggaataagagatttaatgtagttgttgcaacagctaaaggtttggtttatgtacatgaagagtgtttgg |
6624804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 213
Target Start/End: Complemental strand, 21130657 - 21130440
Alignment:
| Q |
2 |
attgatatgtggggatattgtgttgaagggaaacataggcttttggtctatgagtatatagaacatggttctttagcggagaatctatgtt------cta |
95 |
Q |
| |
|
||||| ||||||||||||||||||||||| || ||||| ||||||| |||||||| || ||| |||||||||||||||| ||||| | | | | |
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|
| T |
21130657 |
attgaaatgtggggatattgtgttgaaggtaagcatagaattttggtatatgagtacatggaaaatggttctttagcggaaaatctttcatccaaaacca |
21130558 |
T |
|
| Q |
96 |
attcacttgattggaataagaggtttaatgtagctgttggaacagctaaaggtttggcttatttacatgaagagtgtttggaatgggttttacattgtga |
195 |
Q |
| |
|
| |||||||||||| ||| |||| | || | ||| | |||||||||| || ||| || ||| |||||||||| |||||||||||| |||| |||||||| |
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|
| T |
21130557 |
acacacttgattggactaaaaggtatgatattgctttaggaacagctagagttttagcatatctacatgaagaatgtttggaatggattttgcattgtga |
21130458 |
T |
|
| Q |
196 |
tgtgaaacctcaaaatat |
213 |
Q |
| |
|
| | || ||||||||||| |
|
|
| T |
21130457 |
tataaagcctcaaaatat |
21130440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 2 - 210
Target Start/End: Complemental strand, 18658819 - 18658605
Alignment:
| Q |
2 |
attgatatgtggggatattgtgttgaagggaaacataggcttttggtctatgagtatatagaacatggttctttagcggagaatctatgtt------cta |
95 |
Q |
| |
|
|||||||||||||||||||||| |||||| || ||||| |||||||| |||||||| || ||| |||| |||||||| || ||||| | | ||| |
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|
| T |
18658819 |
attgatatgtggggatattgtgctgaaggtaagcatagacttttggtatatgagtacatggaaaatggatctttagctgaaaatctttcatctaaaacta |
18658720 |
T |
|
| Q |
96 |
attcacttgattggaataagaggtttaatgtagctgttggaacagctaaaggtttggcttatttacatgaagagtgtttggaatgggttttacattgtga |
195 |
Q |
| |
|
| ||||||| |||| ||| |||| | || | ||| | ||||||||||||| | | |||||| |||||||||| |||||||||||| |||| |||||||| |
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|
| T |
18658719 |
acacacttgactggagtaaaaggtatgatattgctttaggaacagctaaagttctagcttatctacatgaagaatgtttggaatggattttgcattgtga |
18658620 |
T |
|
| Q |
196 |
tgtgaaacctcaaaa |
210 |
Q |
| |
|
| | || |||||||| |
|
|
| T |
18658619 |
tataaagcctcaaaa |
18658605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 8 - 213
Target Start/End: Complemental strand, 21111691 - 21111480
Alignment:
| Q |
8 |
atgtggggatattgtgttgaagggaaacataggcttttggtctatgagtatatagaacatggttctttagcggagaatctatgtt------ctaattcac |
101 |
Q |
| |
|
|||||||||||||||| |||||| || ||||| |||||||| |||||||| || ||| |||| |||||||| || ||||| | | |||| ||| |
|
|
| T |
21111691 |
atgtggggatattgtgctgaaggtaagcatagacttttggtatatgagtacatggaaaatggatctttagctgaaaatctttcatctaaaactaacacac |
21111592 |
T |
|
| Q |
102 |
ttgattggaataagaggtttaatgtagctgttggaacagctaaaggtttggcttatttacatgaagagtgtttggaatgggttttacattgtgatgtgaa |
201 |
Q |
| |
|
||||||||| ||| |||| | || | ||| | |||||||||| || | | |||||| |||||||||| ||| | |||||| | || ||||||||| | || |
|
|
| T |
21111591 |
ttgattggagtaaaaggtatgatattgctttaggaacagctagagttcttgcttatctacatgaagaatgtctcgaatggatattgcattgtgatataaa |
21111492 |
T |
|
| Q |
202 |
acctcaaaatat |
213 |
Q |
| |
|
||||||||||| |
|
|
| T |
21111491 |
gcctcaaaatat |
21111480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 210
Target Start/End: Complemental strand, 29213084 - 29213017
Alignment:
| Q |
143 |
aaaggtttggcttatttacatgaagagtgtttggaatgggttttacattgtgatgtgaaacctcaaaa |
210 |
Q |
| |
|
||||||||||||||| | |||||||||||||||| ||| |||| |||||||||||||| || ||||| |
|
|
| T |
29213084 |
aaaggtttggcttatatttatgaagagtgtttggagtggattttgcattgtgatgtgaagccacaaaa |
29213017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 21098712 - 21098766
Alignment:
| Q |
159 |
tacatgaagagtgtttggaatgggttttacattgtgatgtgaaacctcaaaatat |
213 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||| | || || |||||||| |
|
|
| T |
21098712 |
tacatgaagaatgtttggaatggattttacattgtgatataaagccgcaaaatat |
21098766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 213
Target Start/End: Complemental strand, 21123426 - 21123312
Alignment:
| Q |
99 |
cacttgattggaataagaggtttaatgtagctgttggaacagctaaaggtttggcttatttacatgaagagtgtttggaatgggttttacattgtgatgt |
198 |
Q |
| |
|
|||||||||||| ||| |||| | || | ||| | |||||||||| || | | |||||| |||||||||| ||| |||| ||| |||| ||||||||| | |
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|
| T |
21123426 |
cacttgattggagtaaaaggtatgatattgctttaggaacagctagagttcttgcttatctacatgaagaatgtatggagtggattttgcattgtgatat |
21123327 |
T |
|
| Q |
199 |
gaaacctcaaaatat |
213 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
21123326 |
aaagcctcaaaatat |
21123312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 213
Target Start/End: Original strand, 39132235 - 39132296
Alignment:
| Q |
152 |
gcttatttacatgaagagtgtttggaatgggttttacattgtgatgtgaaacctcaaaatat |
213 |
Q |
| |
|
|||||| |||||||||| |||||||| ||| |||||||||||||| | || ||||||||||| |
|
|
| T |
39132235 |
gcttatctacatgaagaatgtttggagtggattttacattgtgatataaagcctcaaaatat |
39132296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 39132078 - 39132134
Alignment:
| Q |
1 |
aattgatatgtggggatattgtgttgaagggaaacataggcttttggtctatgagta |
57 |
Q |
| |
|
|||||| ||||||||||||||||||||||| || ||||| ||||||| |||||||| |
|
|
| T |
39132078 |
aattgaaatgtggggatattgtgttgaaggtaagcatagaattttggtatatgagta |
39132134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 196
Target Start/End: Complemental strand, 11791148 - 11791111
Alignment:
| Q |
159 |
tacatgaagagtgtttggaatgggttttacattgtgat |
196 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
11791148 |
tacatgaggagtgtttggaatgggttttgcattgtgat |
11791111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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