View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13867_low_20 (Length: 297)
Name: NF13867_low_20
Description: NF13867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13867_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 232
Target Start/End: Complemental strand, 2233916 - 2233702
Alignment:
| Q |
18 |
aatttaatcagatgagtcaaaaactctaaactctagtttcatgttacaatcaattttagaggcaaaagctctaaattctagctttaggctagaattgatc |
117 |
Q |
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| T |
2233916 |
aatttaatcagatgagtcaaaaactctaaactctagcttcatgttacaatcaattttagaggcaaaagctctaaattctagctttaggctagaattgatc |
2233817 |
T |
|
| Q |
118 |
ctagaaacaaaatcaattttccttgagaacattcaataatatcaaaaatcaattctacaactctagaatcaattaactcatcataaagtgaaaccaaaca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2233816 |
ctagaaacaaaatcaattttccttgagaacattcaataatatcaaaaatcaattctacaactctagaatcaattaactcatcttaaagtgaaaccaaaca |
2233717 |
T |
|
| Q |
218 |
tgcaccaaattatta |
232 |
Q |
| |
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||||||||||||||| |
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| T |
2233716 |
tgcaccaaattatta |
2233702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 244 - 287
Target Start/End: Complemental strand, 2233626 - 2233583
Alignment:
| Q |
244 |
agaaacaaacaaaaaatcaaattttgacacaaacccattttcat |
287 |
Q |
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|
| T |
2233626 |
agaaacaaacaaaaaatcaaattttgacacaaacccattttcat |
2233583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 191
Target Start/End: Complemental strand, 35995182 - 35995153
Alignment:
| Q |
162 |
aaaatcaattctacaactctagaatcaatt |
191 |
Q |
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|||||||||||||||||||||||||||||| |
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|
| T |
35995182 |
aaaatcaattctacaactctagaatcaatt |
35995153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 51093307 - 51093271
Alignment:
| Q |
65 |
aatcaattttagaggcaaaagctctaaattctagctt |
101 |
Q |
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| T |
51093307 |
aatcaattgtagaggcaaaagctccaaattctagctt |
51093271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 65 - 191
Target Start/End: Complemental strand, 45369212 - 45369087
Alignment:
| Q |
65 |
aatcaattttagaggcaaaagctctaaattctagctttaggctagaattgatcctagaaacaaaatcaattttccttgagaacattcaataatatcaaaa |
164 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||| | | || ||| || |||||| ||||||||||| | ||||||||||| ||| || || ||| |
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| T |
45369212 |
aatcaattttagaggcaaaagctccgaattctagcttcaagttaaaatcaattctagaagcaaaatcaattctacttgagaacatccaaacatctc-aaa |
45369114 |
T |
|
| Q |
165 |
atcaattctacaactctagaatcaatt |
191 |
Q |
| |
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||||| |||||| |||| |||||||| |
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|
| T |
45369113 |
atcaaatctacacctctgaaatcaatt |
45369087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 101
Target Start/End: Original strand, 42423225 - 42423259
Alignment:
| Q |
67 |
tcaattttagaggcaaaagctctaaattctagctt |
101 |
Q |
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|||||||||||| |||||||||||||||||||||| |
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| T |
42423225 |
tcaattttagagacaaaagctctaaattctagctt |
42423259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 24974249 - 24974201
Alignment:
| Q |
36 |
aaaaactctaaactctagtttcatgttacaatcaattttagaggcaaaa |
84 |
Q |
| |
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|||||||||||| ||| | ||||||||| |||||||||| ||||||||| |
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|
| T |
24974249 |
aaaaactctaaattctcgcttcatgttagaatcaattttggaggcaaaa |
24974201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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