View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13867_low_24 (Length: 253)
Name: NF13867_low_24
Description: NF13867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13867_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 6480260 - 6480033
Alignment:
| Q |
18 |
gaacggacagcagctg-gggggacacactgctgcggttgatgaagagacactcaacatccaagccgacaaggaatctattgttgttttcgtagggtttga |
116 |
Q |
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| T |
6480260 |
gaacggacagcaactgcgggggacacaccactgcggttgatgaagagacactcaacatccaagccgacaaggaatctattgttgttttcgtagggtttga |
6480161 |
T |
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| Q |
117 |
tgcttgagagccatttgtccaccatgaaaggtttatttgtgatcattgtgtgaatgatgtctgagtggaagaagacatcgtacttgttgtgagttttgtt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
6480160 |
tgcttgagagccatttgtccaccatgaaaggtttatttgtgatcattgtgtgaatgatgtctgagtggaagaagacatcgtacttgttgtggtttttgtt |
6480061 |
T |
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| Q |
217 |
agggagaacataatcgattgtgatgatg |
244 |
Q |
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||||||| | |||||||||||| ||||| |
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| T |
6480060 |
agggagagcgtaatcgattgtggtgatg |
6480033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 6489295 - 6489519
Alignment:
| Q |
18 |
gaacggacagcagctgggg-ggacacactgctgcggttgatgaagagacactcaacatccaagccgacaaggaatctattgttgttttcgtagggtttga |
116 |
Q |
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||||||||| ||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6489295 |
gaacggacatcagctgggggggacacaccgatgcggttgatgaagagacactcaacatccaagccgacaaggaatctattgttgttttcgtagggtttga |
6489394 |
T |
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| Q |
117 |
tgcttgagagccatttgtccaccatgaaaggtttatttgtgatcattgtgtgaatgatgtctgagtggaagaagacatcgtacttgttgtgagttttgtt |
216 |
Q |
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| T |
6489395 |
tgcttgagagccatttgtccaccatgaaaggtctatttgtgatcattgtgtgaatgatgtctgagtgaaagaagacatcgtac---ttgtgagttttgtt |
6489491 |
T |
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| Q |
217 |
agggagaacataatcgattgtgatgatg |
244 |
Q |
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| T |
6489492 |
agggagagcataaccgattgtggtgatg |
6489519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 22 - 244
Target Start/End: Complemental strand, 51946992 - 51946769
Alignment:
| Q |
22 |
ggacagcagctggggg-gacacactgctgcggttgatgaagagacactcaacatccaagccgacaaggaatctattgttgttttcgtagggtttgatgct |
120 |
Q |
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|||||||||||||||| ||||||| | ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
51946992 |
ggacagcagctgggggagacacaccagagtggttgatgaagagacactcaacatctaagccgacaaggaagctattgttgttttcgtatggtttgatgct |
51946893 |
T |
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| Q |
121 |
tgagagccatttgtccaccatgaaaggtttatttgtgatcattgtgtgaatgatgtctgagtggaagaagacatcgtacttgttgtgagttttgttaggg |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
51946892 |
tgagagccatttgtccaccatgaaaggtttatttgtgatcattgtgtgaatgatgtctgagtggaagaagacatcgtgcttgttgtgagttttattaggg |
51946793 |
T |
|
| Q |
221 |
agaacataatcgattgtgatgatg |
244 |
Q |
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| | | |||||||||||| ||||| |
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| T |
51946792 |
acagcgtaatcgattgtggtgatg |
51946769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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