View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13867_low_26 (Length: 225)

Name: NF13867_low_26
Description: NF13867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13867_low_26
NF13867_low_26
[»] chr8 (3 HSPs)
chr8 (31-130)||(25357166-25357265)
chr8 (131-183)||(7094444-7094496)
chr8 (131-183)||(7098177-7098229)
[»] chr7 (5 HSPs)
chr7 (31-71)||(20539882-20539922)
chr7 (115-184)||(1609114-1609183)
chr7 (115-183)||(2186864-2186932)
chr7 (129-184)||(21270163-21270216)
chr7 (115-181)||(19633211-19633277)
[»] chr3 (1 HSPs)
chr3 (131-183)||(8377305-8377357)
[»] chr1 (4 HSPs)
chr1 (131-183)||(22362532-22362584)
chr1 (131-183)||(33885917-33885970)
chr1 (131-183)||(33958282-33958335)
chr1 (134-183)||(41314548-41314597)
[»] chr5 (2 HSPs)
chr5 (115-183)||(37627683-37627751)
chr5 (115-183)||(37806806-37806874)
[»] chr4 (1 HSPs)
chr4 (139-184)||(11993129-11993173)


Alignment Details
Target: chr8 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 25357166 - 25357265
Alignment:
Q  31 aaggaaggttttgatttagtaacaatttcatgtaaacttagtgtacaggaaaagagaacaaaagcaacgtgtttaaaaagatcagtgtaacctcctattt 130  Q
    |||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  25357166 aaggaaggctttgacttagtaacaatttcatgtagacttagtgtacaggaaaagagaacaaaagcaacgtgtttaaaaagatcggtgtaacctcctattt 25357265  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 7094496 - 7094444
Alignment:
Q  131 cttaagtatagtgccactcatttaggaaggaagttagtgggaaggttatttca 183  Q
    |||||| |||||||||||| |||||||||| ||||||||||| ||||||||||    
T  7094496 cttaagcatagtgccactcttttaggaagggagttagtgggagggttatttca 7094444  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 7098229 - 7098177
Alignment:
Q  131 cttaagtatagtgccactcatttaggaaggaagttagtgggaaggttatttca 183  Q
    |||||| |||||||||||| |||||||||| ||||||||||| ||||||||||    
T  7098229 cttaagcatagtgccactcttttaggaagggagttagtgggagggttatttca 7098177  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 20539922 - 20539882
Alignment:
Q  31 aaggaaggttttgatttagtaacaatttcatgtaaacttag 71  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  20539922 aaggaaggttttgatttagtaacaatttcatgtaaacttag 20539882  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 184
Target Start/End: Complemental strand, 1609183 - 1609114
Alignment:
Q  115 gtgtaacctcctatttcttaagtatagtgccactcatttaggaaggaagttagtgggaaggttatttcat 184  Q
    ||||||||| | ||| || |||||||||||||||||| |||||||  |||||||||||  ||||||||||    
T  1609183 gtgtaacctaccattcctcaagtatagtgccactcatctaggaagagagttagtgggatagttatttcat 1609114  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 183
Target Start/End: Original strand, 2186864 - 2186932
Alignment:
Q  115 gtgtaacctcctatttcttaagtatagtgccactcatttaggaaggaagttagtgggaaggttatttca 183  Q
    ||||||||| | ||| || |||||||||||||||||| |||||||  |||||||||||  |||||||||    
T  2186864 gtgtaacctaccattcctcaagtatagtgccactcatctaggaagagagttagtgggagagttatttca 2186932  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 184
Target Start/End: Complemental strand, 21270216 - 21270163
Alignment:
Q  129 ttcttaagtatagtgccactcatttaggaaggaagttagtgggaaggttatttcat 184  Q
    |||||||| |||||||||||||||||||||||  ||||||||| ||||||||||||    
T  21270216 ttcttaagcatagtgccactcatttaggaagg-ggttagtggg-aggttatttcat 21270163  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 181
Target Start/End: Complemental strand, 19633277 - 19633211
Alignment:
Q  115 gtgtaacctcctatttcttaagtatagtgccactcatttaggaaggaagttagtgggaaggttattt 181  Q
    ||||||||| | ||| || |||||||||||||||||| |||||||  |||||||||||  |||||||    
T  19633277 gtgtaacctaccattcctcaagtatagtgccactcatctaggaagagagttagtgggagagttattt 19633211  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 8377305 - 8377357
Alignment:
Q  131 cttaagtatagtgccactcatttaggaaggaagttagtgggaaggttatttca 183  Q
    |||||| |||||||||||| |||||||||| ||||||||||| ||||||||||    
T  8377305 cttaagcatagtgccactcttttaggaagggagttagtgggagggttatttca 8377357  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 22362532 - 22362584
Alignment:
Q  131 cttaagtatagtgccactcatttaggaaggaagttagtgggaaggttatttca 183  Q
    |||||| |||||||||||| |||||||||| ||||||||||| ||||||||||    
T  22362532 cttaagcatagtgccactcttttaggaagggagttagtgggagggttatttca 22362584  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 33885917 - 33885970
Alignment:
Q  131 cttaagtatagtgccactcattt-aggaaggaagttagtgggaaggttatttca 183  Q
    |||||| |||||||||||| ||| ||||||| ||||||||||| ||||||||||    
T  33885917 cttaagcatagtgccactctttttaggaagggagttagtgggagggttatttca 33885970  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 33958335 - 33958282
Alignment:
Q  131 cttaagtatagtgccactcattt-aggaaggaagttagtgggaaggttatttca 183  Q
    |||||| |||||||||||| ||| ||||||| ||||||||||| ||||||||||    
T  33958335 cttaagcatagtgccactctttttaggaagggagttagtgggagggttatttca 33958282  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 183
Target Start/End: Complemental strand, 41314597 - 41314548
Alignment:
Q  134 aagtatagtgccactcatttaggaaggaagttagtgggaaggttatttca 183  Q
    |||||||||||||||||| |||||||  |||||||||||  |||||||||    
T  41314597 aagtatagtgccactcatctaggaagagagttagtgggagagttatttca 41314548  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 183
Target Start/End: Complemental strand, 37627751 - 37627683
Alignment:
Q  115 gtgtaacctcctatttcttaagtatagtgccactcatttaggaaggaagttagtgggaaggttatttca 183  Q
    ||||||||| | ||| || |||||||||||||||||| |||||||  |||||||||||  |||||||||    
T  37627751 gtgtaacctaccattcctcaagtatagtgccactcatctaggaagagagttagtgggagagttatttca 37627683  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 183
Target Start/End: Complemental strand, 37806874 - 37806806
Alignment:
Q  115 gtgtaacctcctatttcttaagtatagtgccactcatttaggaaggaagttagtgggaaggttatttca 183  Q
    ||||||||| | ||| || |||||||||||||||||| |||||||  |||||||||||  |||||||||    
T  37806874 gtgtaacctaccattcctcaagtatagtgccactcatctaggaagagagttagtgggagagttatttca 37806806  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 11993173 - 11993129
Alignment:
Q  139 tagtgccactcatttaggaaggaagttagtgggaaggttatttcat 184  Q
    ||||||||||| |||||||||| |||||||||| ||||||||||||    
T  11993173 tagtgccactcttttaggaagggagttagtggg-aggttatttcat 11993129  T

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