View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13867_low_28 (Length: 217)
Name: NF13867_low_28
Description: NF13867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13867_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 13 - 199
Target Start/End: Original strand, 31214815 - 31215002
Alignment:
| Q |
13 |
attattctacttcatctttttctcctccttaatcaactatttattattttggtttatcttacactgcattcgttagttcatggtaggacagacaaatcaa |
112 |
Q |
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| T |
31214815 |
attattctacttcatctttttctcctccttaatcaactatttattattttggtttatcttacattgcattcgttagttcatggtaggacagacaaatcaa |
31214914 |
T |
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| Q |
113 |
gatctcatggtgtgttcctttttcaat-nnnnnnnctggtttcctgaatattatgttctatgtatgtaattaataggtagtctaaaca |
199 |
Q |
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| T |
31214915 |
gatctcatggtgtgttcctttttcaataaaaaaaactggtttcctgaatattatgttctatgtatgtaattaataggtagtctaaaca |
31215002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 147 - 199
Target Start/End: Original strand, 31201747 - 31201798
Alignment:
| Q |
147 |
ctggtttcctgaatattatgttctatgtatgtaattaataggtagtctaaaca |
199 |
Q |
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| T |
31201747 |
ctggtttcttgaatattatgttctatgtatgtaatt-ataggaagtctaaaca |
31201798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 107
Target Start/End: Complemental strand, 31214473 - 31214434
Alignment:
| Q |
68 |
atcttacactgcattcgttagttcatggtaggacagacaa |
107 |
Q |
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| T |
31214473 |
atcttacattgcattcgttagttcatggtaggacagacaa |
31214434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 30498994 - 30498942
Alignment:
| Q |
17 |
ttctacttcatctttttctcctccttaatc--aactatttattattttggttt |
67 |
Q |
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| T |
30498994 |
ttctacttcatctttttttcctccttaatcaaaactatttattatttttgttt |
30498942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 106
Target Start/End: Original strand, 30499353 - 30499388
Alignment:
| Q |
71 |
ttacactgcattcgttagttcatggtaggacagaca |
106 |
Q |
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| T |
30499353 |
ttacattgcattcgttagttcatggtaggacagaca |
30499388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 48671622 - 48671654
Alignment:
| Q |
19 |
ctacttcatctttttctcctccttaatcaacta |
51 |
Q |
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| T |
48671622 |
ctacttcatctttttttcctccttaatcaacta |
48671654 |
T |
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