View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13867_low_4 (Length: 552)
Name: NF13867_low_4
Description: NF13867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13867_low_4 |
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| [»] scaffold0010 (1 HSPs) |
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Alignment Details
Target: scaffold0010 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 18 - 540
Target Start/End: Original strand, 253241 - 253763
Alignment:
| Q |
18 |
ataagcactcaaaatttctacattggtaattcccccatctaacatttctttcatctggtaatctccagagtgactcgttgattgggtaaggtttactgta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
253241 |
ataagcactcaaaatttctacattggtaattcccccatctaacatttctttcatctggtaatctccagagtgactcattgattgggtaaggtttactgta |
253340 |
T |
|
| Q |
118 |
aactttcgaagcccgtgtcaaacatcttcttctaggcaaaggatcacacccattaagcataagcttttgagctaaattccaatcatcatcacagtatgaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
253341 |
aactttcgaagcccgtgtcaaacatcttcttctaggtaaaggatcacacccattaagcataagcttttgagctaaattccaatcatcatcacagtatgaa |
253440 |
T |
|
| Q |
218 |
ccaatgtcatagtccatgtactgttctagctctttcttatgcaaaacacatgcatgcccaattgtgttataaaccttgtctgacccatatagattaatcc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
253441 |
ccaatgtcatagtccatgtactgttctagctctttcttatgcaaaacacatgcatgcccaattgtgttataaaccttgtctgacccatatagattaatcc |
253540 |
T |
|
| Q |
318 |
tactaactctattctcctttggggttatatactttctaatctcctcagtgacnnnnnnnttaatcaaaggatcctcttttactgtggagtttcctctttc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
253541 |
tactaactctattctcctttggggttatatactttctaatctcctcagtgacaaaaaaattaatcaaaggatcctcttttactgtggagtttcctctttc |
253640 |
T |
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| Q |
418 |
ttcaaactttggaagtctaatctgtcttaaagcaacattagcactgtgaagaggcctaactatttcatcctctaaatatttcttatctaaggttatgctc |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
253641 |
ttcaaactttggaagtctaatctgtcttaaagcaacattagcactatgaagaggcctaactatttcatcctctaaatatttcttatctaaggttatgctc |
253740 |
T |
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| Q |
518 |
ttgtttttctccatttcttgttc |
540 |
Q |
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||||||||||||||||||||||| |
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| T |
253741 |
ttgtttttctccatttcttgttc |
253763 |
T |
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