View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13867_low_5 (Length: 521)
Name: NF13867_low_5
Description: NF13867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13867_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 16 - 515
Target Start/End: Complemental strand, 10120864 - 10120365
Alignment:
| Q |
16 |
caacaatgatatttgcttggtttttgtttgagtatcccatattctccatggtttcatcatccaaaagtcccataaagtcccatgaatgagtagtatacaa |
115 |
Q |
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| T |
10120864 |
caacaataacatttgcttggtttttgtttgagtatcccatattctccatggtttcatcatccaaaagtcccataaagtcccatgaatgagtagtatacaa |
10120765 |
T |
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| Q |
116 |
cnnnnnnnnagaattggggaacacagaaactactcccggcatttctggtcacattcaaaccaaataaataagtaaacaacaaaaattataggatccttta |
215 |
Q |
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| T |
10120764 |
ctttcttttagaattggggaacacagaaactactcccggcatttctggtcacattcaaaccaaataaataagtaaacaacaaaaattataggatacttta |
10120665 |
T |
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| Q |
216 |
agcattgaagctttaaggaagaggaaaatgtcactgacttgaaatttggtaagcttgttcattggtcaactttgctgcaaagcctttgaaaccatgtttg |
315 |
Q |
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| T |
10120664 |
agcattgaagctttaaggaagaggaaaatgtcactgacttgaaatttggtaagcttgttcattggtcaactttgctgcaaagcctttgaaaccatgtttg |
10120565 |
T |
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| Q |
316 |
tagctgcaaatatgtgaagcctgtgcttgttcaacactgttaaaaaataaggaaaaatcacatacctgaaattacatagaaaaagggatattccaaatga |
415 |
Q |
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| T |
10120564 |
tagctgtaaatatgtgaagcctgtgcttgttcaacactgttaaaaaataaggaaaaatcacatacctgaaattacatagaaaaagggatattccaaatga |
10120465 |
T |
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| Q |
416 |
atacaagaattaatttcttaccttccactatgaacatctgctagcatttgatgattatgcttcagaatatcatctgagtcttgatcactacctttgcttc |
515 |
Q |
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| T |
10120464 |
atacaagaattaatttcttaccttccactatgaacatctgctagcatttgatgattatgcttcagaatatcatctgagtcttgatcactacctttgcttc |
10120365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 111
Target Start/End: Original strand, 30629897 - 30629948
Alignment:
| Q |
60 |
tccatggtttcatcatccaaaagtcccataaagtcccatgaatgagtagtat |
111 |
Q |
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| T |
30629897 |
tccatggtttgatcatctaaaagtcccatgaaatcccatgaatgagttgtat |
30629948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 349
Target Start/End: Original strand, 30630322 - 30630415
Alignment:
| Q |
256 |
gaaatttggtaagcttgttcattggtcaactttgctgcaaagcctttgaaaccatgtttgtagctgcaaatatgtgaagcctgtgcttgttcaa |
349 |
Q |
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| T |
30630322 |
gaaattttggaagcttgttcatcagtgagcttagctgcaaagcctctgaatccatgtctatagctataaatatgagaagcttgtgcttcttcaa |
30630415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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