View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13867_low_6 (Length: 464)

Name: NF13867_low_6
Description: NF13867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13867_low_6
NF13867_low_6
[»] chr1 (3 HSPs)
chr1 (1-426)||(48942358-48942793)
chr1 (425-464)||(14461639-14461678)
chr1 (425-464)||(24614666-24614705)
[»] chr7 (7 HSPs)
chr7 (373-431)||(38984669-38984727)
chr7 (425-464)||(323749-323788)
chr7 (425-464)||(1575765-1575804)
chr7 (425-464)||(10286337-10286376)
chr7 (425-463)||(36482769-36482807)
chr7 (425-462)||(31280318-31280355)
chr7 (423-463)||(6714335-6714375)
[»] chr2 (5 HSPs)
chr2 (425-463)||(42295955-42295993)
chr2 (425-464)||(16671935-16671974)
chr2 (425-464)||(18511480-18511519)
chr2 (425-461)||(15441068-15441104)
chr2 (425-461)||(22595999-22596035)
[»] chr8 (8 HSPs)
chr8 (423-464)||(32906824-32906865)
chr8 (424-464)||(31127395-31127435)
chr8 (425-464)||(1265038-1265077)
chr8 (425-464)||(4602519-4602558)
chr8 (425-464)||(13470788-13470827)
chr8 (425-464)||(43620183-43620222)
chr8 (423-461)||(37949083-37949121)
chr8 (425-461)||(10183381-10183417)
[»] chr6 (5 HSPs)
chr6 (424-464)||(13531221-13531261)
chr6 (425-464)||(7608426-7608465)
chr6 (425-464)||(21946633-21946672)
chr6 (425-461)||(17523276-17523312)
chr6 (429-464)||(16705494-16705529)
[»] chr5 (6 HSPs)
chr5 (425-464)||(33160438-33160477)
chr5 (425-461)||(10415728-10415764)
chr5 (424-464)||(12291510-12291550)
chr5 (425-461)||(20666479-20666515)
chr5 (425-464)||(40987263-40987302)
chr5 (425-462)||(25932095-25932132)
[»] chr4 (9 HSPs)
chr4 (425-464)||(24575301-24575340)
chr4 (427-464)||(9279850-9279887)
chr4 (427-464)||(46252066-46252103)
chr4 (425-464)||(7431983-7432022)
chr4 (425-460)||(7700214-7700249)
chr4 (423-458)||(15541761-15541796)
chr4 (425-464)||(47498984-47499023)
chr4 (427-464)||(42414693-42414730)
chr4 (431-464)||(42429936-42429969)
[»] chr3 (6 HSPs)
chr3 (425-464)||(37282781-37282820)
chr3 (425-464)||(32056016-32056055)
chr3 (426-463)||(39717358-39717395)
chr3 (423-464)||(40166932-40166973)
chr3 (428-464)||(1030387-1030423)
chr3 (431-463)||(45700933-45700965)
[»] scaffold0396 (1 HSPs)
scaffold0396 (429-464)||(1401-1436)
[»] scaffold0003 (1 HSPs)
scaffold0003 (425-460)||(291665-291700)


Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Complemental strand, 48942793 - 48942358
Alignment:
Q  1 tgaacctttttcccaccaaaagccaccattatcgtttccgtctgaagtttcggtagtgactagtgaag----------tttgagcttggaacagagaaat 90  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||          |||||||||| |||||||||||    
T  48942793 tgaacctttttcccaccgaaaaccaccattatcgtttccgtctgaagtttcggtagtgactagtgaagggaagtgaagtttgagcttgaaacagagaaat 48942694  T
Q  91 gagaatgaggaaaaataaaaatcagagtaaaaacgacggcgttttgtgagtgaagagcatgggtgacacgtgttaatttgtgtgtgtagatagataagac 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48942693 gagaatgaggaaaaataaaaatcagagtaaaaacgacggcgttttgtgagtgaagagcatgggtgacacgtgttaatttgtgtgtgtagatagataagac 48942594  T
Q  191 gagtagnnnnnnnnnnnnncggaactgtagagtgtacttgtatcagtgagaaaagaaaaaggttttctgttttttgttttatcgtttccttatcgtaatc 290  Q
    ||||||             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48942593 gagtagaaaaaactaaaaacggaactgtagagtgtacttgtatcagtgagaaaagaaaaaggttttctgttttttgttttatcgtttccttatcgtaatc 48942494  T
Q  291 tcaattgggtgggtttttgcttcaatacaaagccaaaacaatcccataatgagacgttggggcttatcttttcggatttttcctctagcttaagttctgt 390  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  48942493 tcaattgggtgggtttttgcttcaatacaaagccaaaacaatcccataatgagacgttggggcttatctttttggatttttcctctggcttaagttctgt 48942394  T
Q  391 tttgatcttgtgtaacttctgttctatggctgtata 426  Q
    ||||||||||||||||||||||||||||||||||||    
T  48942393 tttgatcttgtgtaacttctgttctatggctgtata 48942358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 425 - 464
Target Start/End: Original strand, 14461639 - 14461678
Alignment:
Q  425 taggggtgttcaaatctaaaccgatccaaaataaaaccgc 464  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  14461639 taggggtgttcaaatccaaaccgatccaaaataaaaccgc 14461678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 425 - 464
Target Start/End: Original strand, 24614666 - 24614705
Alignment:
Q  425 taggggtgttcaaatctaaaccgatccaaaataaaaccgc 464  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  24614666 taggggtgttcaaatccaaaccgatccaaaataaaaccgc 24614705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 373 - 431
Target Start/End: Original strand, 38984669 - 38984727
Alignment:
Q  373 ctctagcttaagttctgttttgatcttgtgtaacttctgttctatggctgtataggggt 431  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  38984669 ctctagcttaagttctgttttgatcttgtgtaacttctgttctacggctgtataagggt 38984727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 425 - 464
Target Start/End: Complemental strand, 323788 - 323749
Alignment:
Q  425 taggggtgttcaaatctaaaccgatccaaaataaaaccgc 464  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  323788 taggggtgttcaaatccaaaccgatccaaaataaaaccgc 323749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 425 - 464
Target Start/End: Original strand, 1575765 - 1575804
Alignment:
Q  425 taggggtgttcaaatctaaaccgatccaaaataaaaccgc 464  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  1575765 taggggtgttcaaatccaaaccgatccaaaataaaaccgc 1575804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 425 - 464
Target Start/End: Original strand, 10286337 - 10286376
Alignment:
Q  425 taggggtgttcaaatctaaaccgatccaaaataaaaccgc 464  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  10286337 taggggtgttcaaatccaaaccgatccaaaataaaaccgc 10286376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 425 - 463
Target Start/End: Complemental strand, 36482807 - 36482769
Alignment:
Q  425 taggggtgttcaaatctaaaccgatccaaaataaaaccg 463  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  36482807 taggggtgttcaaatccaaaccgatccaaaataaaaccg 36482769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 425 - 462
Target Start/End: Complemental strand, 31280355 - 31280318
Alignment:
Q  425 taggggtgttcaaatctaaaccgatccaaaataaaacc 462  Q
    |||||||||||||||||||| |||||||||||||||||    
T  31280355 taggggtgttcaaatctaaatcgatccaaaataaaacc 31280318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 423 - 463
Target Start/End: Complemental strand, 6714375 - 6714335
Alignment:
Q  423 tataggggtgttcaaatctaaaccgatccaaaataaaaccg 463  Q
    |||||||||||||||||| |||||||||||||  |||||||    
T  6714375 tataggggtgttcaaatccaaaccgatccaaagaaaaaccg 6714335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 425 - 463
Target Start/End: Complemental strand, 42295993 - 42295955
Alignment:
Q  425 taggggtgttcaaatctaaaccgatccaaaataaaaccg 463  Q
    |||||||||||||||||||||||||||||||||||||||    
T  42295993 taggggtgttcaaatctaaaccgatccaaaataaaaccg 42295955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 425 - 464
Target Start/End: Original strand, 16671935 - 16671974
Alignment:
Q  425 taggggtgttcaaatctaaaccgatccaaaataaaaccgc 464  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  16671935 taggggtgttcaaatccaaaccgatccaaaataaaaccgc 16671974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 425 - 464
Target Start/End: Original strand, 18511480 - 18511519
Alignment:
Q  425 taggggtgttcaaatctaaaccgatccaaaataaaaccgc 464  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  18511480 taggggtgttcaaatccaaaccgatccaaaataaaaccgc 18511519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 425 - 461
Target Start/End: Original strand, 15441068 - 15441104
Alignment:
Q  425 taggggtgttcaaatctaaaccgatccaaaataaaac 461  Q
    |||||||||||||||| ||||||||||||||||||||    
T  15441068 taggggtgttcaaatccaaaccgatccaaaataaaac 15441104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 425 - 461
Target Start/End: Original strand, 22595999 - 22596035
Alignment:
Q  425 taggggtgttcaaatctaaaccgatccaaaataaaac 461  Q
    |||||||||||| ||| ||||||||||||||||||||    
T  22595999 taggggtgttcagatccaaaccgatccaaaataaaac 22596035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 423 - 464
Target Start/End: Original strand, 32906824 - 32906865
Alignment:
Q  423 tataggggtgttcaaatctaaaccgatccaaaataaaaccgc 464  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  32906824 tataggggtgttcaaatccaaaccgatccaaaataaaaccgc 32906865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 424 - 464
Target Start/End: Complemental strand, 31127435 - 31127395
Alignment:
Q  424 ataggggtgttcaaatctaaaccgatccaaaataaaaccgc 464  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  31127435 ataggggtgttcaaatccaaaccgatccaaaataaaaccgc 31127395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 425 - 464
Target Start/End: Original strand, 1265038 - 1265077
Alignment:
Q  425 taggggtgttcaaatctaaaccgatccaaaataaaaccgc 464  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  1265038 taggggtgttcaaatccaaaccgatccaaaataaaaccgc 1265077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 425 - 464
Target Start/End: Original strand, 4602519 - 4602558
Alignment:
Q  425 taggggtgttcaaatctaaaccgatccaaaataaaaccgc 464  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  4602519 taggggtgttcaaatccaaaccgatccaaaataaaaccgc 4602558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 464
Target Start/End: Original strand, 13470788 - 13470827
Alignment:
Q  425 taggggtgttcaaatctaaaccgatccaaaataaaaccgc 464  Q
    |||||||||||||||| ||||||||| |||||||||||||    
T  13470788 taggggtgttcaaatccaaaccgatctaaaataaaaccgc 13470827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 464
Target Start/End: Complemental strand, 43620222 - 43620183
Alignment:
Q  425 taggggtgttcaaatctaaaccgatccaaaataaaaccgc 464  Q
    |||||||||||||||| |||| ||||||||||||||||||    
T  43620222 taggggtgttcaaatccaaactgatccaaaataaaaccgc 43620183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 423 - 461
Target Start/End: Complemental strand, 37949121 - 37949083
Alignment:
Q  423 tataggggtgttcaaatctaaaccgatccaaaataaaac 461  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  37949121 tataggggtgttcaaatccataccgatccaaaataaaac 37949083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 425 - 461
Target Start/End: Complemental strand, 10183417 - 10183381
Alignment:
Q  425 taggggtgttcaaatctaaaccgatccaaaataaaac 461  Q
    |||||||||||||||  ||||||||||||||||||||    
T  10183417 taggggtgttcaaattcaaaccgatccaaaataaaac 10183381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 424 - 464
Target Start/End: Original strand, 13531221 - 13531261
Alignment:
Q  424 ataggggtgttcaaatctaaaccgatccaaaataaaaccgc 464  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  13531221 ataggggtgttcaaatccaaaccgatccaaaataaaaccgc 13531261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 425 - 464
Target Start/End: Complemental strand, 7608465 - 7608426
Alignment:
Q  425 taggggtgttcaaatctaaaccgatccaaaataaaaccgc 464  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  7608465 taggggtgttcaaatccaaaccgatccaaaataaaaccgc 7608426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 425 - 464
Target Start/End: Original strand, 21946633 - 21946672
Alignment:
Q  425 taggggtgttcaaatctaaaccgatccaaaataaaaccgc 464  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  21946633 taggggtgttcaaatccaaaccgatccaaaataaaaccgc 21946672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 425 - 461
Target Start/End: Complemental strand, 17523312 - 17523276
Alignment:
Q  425 taggggtgttcaaatctaaaccgatccaaaataaaac 461  Q
    |||||||||||||||| ||||||||||||||||||||    
T  17523312 taggggtgttcaaatccaaaccgatccaaaataaaac 17523276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 464
Target Start/End: Complemental strand, 16705529 - 16705494
Alignment:
Q  429 ggtgttcaaatctaaaccgatccaaaataaaaccgc 464  Q
    |||||||||||| |||||||||||||||||||||||    
T  16705529 ggtgttcaaatccaaaccgatccaaaataaaaccgc 16705494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 425 - 464
Target Start/End: Original strand, 33160438 - 33160477
Alignment:
Q  425 taggggtgttcaaatctaaaccgatccaaaataaaaccgc 464  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  33160438 taggggtgttcaaatccaaaccgatccaaaataaaaccgc 33160477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 425 - 461
Target Start/End: Original strand, 10415728 - 10415764
Alignment:
Q  425 taggggtgttcaaatctaaaccgatccaaaataaaac 461  Q
    |||||||||||||||||||||||||| ||||||||||    
T  10415728 taggggtgttcaaatctaaaccgatctaaaataaaac 10415764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 464
Target Start/End: Complemental strand, 12291550 - 12291510
Alignment:
Q  424 ataggggtgttcaaatctaaaccgatccaaaataaaaccgc 464  Q
    ||||||||||||||||| |||||||| ||||||||||||||    
T  12291550 ataggggtgttcaaatccaaaccgattcaaaataaaaccgc 12291510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 425 - 461
Target Start/End: Original strand, 20666479 - 20666515
Alignment:
Q  425 taggggtgttcaaatctaaaccgatccaaaataaaac 461  Q
    |||||||||||||||||||||||||||||| ||||||    
T  20666479 taggggtgttcaaatctaaaccgatccaaattaaaac 20666515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 464
Target Start/End: Original strand, 40987263 - 40987302
Alignment:
Q  425 taggggtgttcaaatctaaaccgatccaaaataaaaccgc 464  Q
    |||||||||||||||| ||||||||| |||||||||||||    
T  40987263 taggggtgttcaaatccaaaccgatctaaaataaaaccgc 40987302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 462
Target Start/End: Original strand, 25932095 - 25932132
Alignment:
Q  425 taggggtgttcaaatctaaaccgatccaaaataaaacc 462  Q
    |||||||||||||||| ||||||||||||| |||||||    
T  25932095 taggggtgttcaaatccaaaccgatccaaattaaaacc 25932132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 425 - 464
Target Start/End: Complemental strand, 24575340 - 24575301
Alignment:
Q  425 taggggtgttcaaatctaaaccgatccaaaataaaaccgc 464  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  24575340 taggggtgttcaaatccaaaccgatccaaaataaaaccgc 24575301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 427 - 464
Target Start/End: Original strand, 9279850 - 9279887
Alignment:
Q  427 ggggtgttcaaatctaaaccgatccaaaataaaaccgc 464  Q
    |||||||||||||| |||||||||||||||||||||||    
T  9279850 ggggtgttcaaatccaaaccgatccaaaataaaaccgc 9279887  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 427 - 464
Target Start/End: Complemental strand, 46252103 - 46252066
Alignment:
Q  427 ggggtgttcaaatctaaaccgatccaaaataaaaccgc 464  Q
    |||||||||||||| |||||||||||||||||||||||    
T  46252103 ggggtgttcaaatccaaaccgatccaaaataaaaccgc 46252066  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 464
Target Start/End: Complemental strand, 7432022 - 7431983
Alignment:
Q  425 taggggtgttcaaatctaaaccgatccaaaataaaaccgc 464  Q
    |||||||||||||||| |||| ||||||||||||||||||    
T  7432022 taggggtgttcaaatccaaactgatccaaaataaaaccgc 7431983  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 460
Target Start/End: Original strand, 7700214 - 7700249
Alignment:
Q  425 taggggtgttcaaatctaaaccgatccaaaataaaa 460  Q
    |||||||||||||||| |||||||||||||||||||    
T  7700214 taggggtgttcaaatccaaaccgatccaaaataaaa 7700249  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 423 - 458
Target Start/End: Original strand, 15541761 - 15541796
Alignment:
Q  423 tataggggtgttcaaatctaaaccgatccaaaataa 458  Q
    |||||||||||||||||||||| |||||||||||||    
T  15541761 tataggggtgttcaaatctaaatcgatccaaaataa 15541796  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 464
Target Start/End: Complemental strand, 47499023 - 47498984
Alignment:
Q  425 taggggtgttcaaatctaaaccgatccaaaataaaaccgc 464  Q
    ||||| |||||||||| |||||||||||||||||||||||    
T  47499023 tagggttgttcaaatcaaaaccgatccaaaataaaaccgc 47498984  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 464
Target Start/End: Complemental strand, 42414730 - 42414693
Alignment:
Q  427 ggggtgttcaaatctaaaccgatccaaaataaaaccgc 464  Q
    |||||||||||||| ||||||||||||| |||||||||    
T  42414730 ggggtgttcaaatccaaaccgatccaaactaaaaccgc 42414693  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 464
Target Start/End: Original strand, 42429936 - 42429969
Alignment:
Q  431 tgttcaaatctaaaccgatccaaaataaaaccgc 464  Q
    |||||||||| |||||||||||||||||||||||    
T  42429936 tgttcaaatccaaaccgatccaaaataaaaccgc 42429969  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 425 - 464
Target Start/End: Complemental strand, 37282820 - 37282781
Alignment:
Q  425 taggggtgttcaaatctaaaccgatccaaaataaaaccgc 464  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  37282820 taggggtgttcaaatccaaaccgatccaaaataaaaccgc 37282781  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 464
Target Start/End: Complemental strand, 32056055 - 32056016
Alignment:
Q  425 taggggtgttcaaatctaaaccgatccaaaataaaaccgc 464  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  32056055 taggggtgttcaaattcaaaccgatccaaaataaaaccgc 32056016  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 463
Target Start/End: Complemental strand, 39717395 - 39717358
Alignment:
Q  426 aggggtgttcaaatctaaaccgatccaaaataaaaccg 463  Q
    ||||||||||||||| ||||| ||||||||||||||||    
T  39717395 aggggtgttcaaatccaaacctatccaaaataaaaccg 39717358  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 464
Target Start/End: Complemental strand, 40166973 - 40166932
Alignment:
Q  423 tataggggtgttcaaatctaaaccgatccaaaataaaaccgc 464  Q
    |||||||||||||| ||| ||||||||| |||||||||||||    
T  40166973 tataggggtgttcagatccaaaccgatctaaaataaaaccgc 40166932  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 428 - 464
Target Start/End: Original strand, 1030387 - 1030423
Alignment:
Q  428 gggtgttcaaatctaaaccgatccaaaataaaaccgc 464  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  1030387 gggtgttcaaatccaaaccgatccaaactaaaaccgc 1030423  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 431 - 463
Target Start/End: Original strand, 45700933 - 45700965
Alignment:
Q  431 tgttcaaatctaaaccgatccaaaataaaaccg 463  Q
    |||||||||||||||||||| ||||||||||||    
T  45700933 tgttcaaatctaaaccgatctaaaataaaaccg 45700965  T

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Target: scaffold0396 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0396
Description:

Target: scaffold0396; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 464
Target Start/End: Complemental strand, 1436 - 1401
Alignment:
Q  429 ggtgttcaaatctaaaccgatccaaaataaaaccgc 464  Q
    |||||||||||| |||||||||||||||||||||||    
T  1436 ggtgttcaaatccaaaccgatccaaaataaaaccgc 1401  T

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Target: scaffold0003 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 460
Target Start/End: Original strand, 291665 - 291700
Alignment:
Q  425 taggggtgttcaaatctaaaccgatccaaaataaaa 460  Q
    |||||||||||||||| |||||||||||||||||||    
T  291665 taggggtgttcaaatccaaaccgatccaaaataaaa 291700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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