View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13867_low_7 (Length: 458)
Name: NF13867_low_7
Description: NF13867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13867_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 6 - 440
Target Start/End: Complemental strand, 52030978 - 52030544
Alignment:
| Q |
6 |
agtgagaagaagaatccaactggtaagaaaggtaatcttcctgtaataaaatacacgaatgatatcaacaatactgagagcataagcagtgccactccca |
105 |
Q |
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| T |
52030978 |
agtgagaacaagaatccaactggtaagaaaggtaatcttcctgtaataaaatacacgaatgatatcaacaatactgagagcataagcagtgccactccca |
52030879 |
T |
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| Q |
106 |
aacgcagcaccagcatttgcaaacatggaaataagcacgtgttctttcacgttaaaaggacccggatttaacgaaaactctctctctccaaaaccaatga |
205 |
Q |
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| T |
52030878 |
aacgcagcaccagcatttgcaaacatggaaataagcacgtgctctttcacgttaaaaggacccggatttaacgaaaactctctctctccaaaaccaatga |
52030779 |
T |
|
| Q |
206 |
tccgaaacttttttgtaggaagcaccttagccatgaatcgaccaataggaagcgttgcaacctgaattgttatcattgtaaccattaatggttgggttct |
305 |
Q |
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| T |
52030778 |
tccgaaacttttttgtaggaagcaccttagccatgaatcgaccaataggaagcgttgcaacctgaattgttatcattgtaaccgttaatggttgggttct |
52030679 |
T |
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| Q |
306 |
gtaaatgaaaaatgtgtttatgtaagaaagcaacaccaccgagataattcccaacgtccacatacggaacgtccatatcggaaggttctgatcatcctcg |
405 |
Q |
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| T |
52030678 |
gtaaatgaaaaatgtgtttatgtaagaaagcaacaccaccgagataattcccatcgtccacatacggaacgtccatatcgggaggttctggtcatcctcg |
52030579 |
T |
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| Q |
406 |
tttgacaccaccgcccgaacctcctcaataggtga |
440 |
Q |
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| T |
52030578 |
tttgacaccaccgcccgaacctcctcaataggtga |
52030544 |
T |
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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 102 - 183
Target Start/End: Complemental strand, 36900340 - 36900259
Alignment:
| Q |
102 |
cccaaacgcagcaccagcatttgcaaacatggaaataagcacgtgttctttcacgttaaaaggacccggatttaacgaaaac |
183 |
Q |
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|||||||||||| |||||||||||||| |||| |||||| || ||||| |||| |||||| ||||| || || ||||||||| |
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| T |
36900340 |
cccaaacgcagccccagcatttgcaaatatggtaataagaacatgttccttcatgttaaacggacctgggttaaacgaaaac |
36900259 |
T |
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