View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13868_high_1 (Length: 427)
Name: NF13868_high_1
Description: NF13868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13868_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 140 - 411
Target Start/End: Original strand, 38674373 - 38674644
Alignment:
| Q |
140 |
ttcatcatcggaacaagataaagttgttaaaacaatagaacctnnnnnnnggcgggaaagtgaaaactgacggatgcataatcggggtggttagcggtca |
239 |
Q |
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| T |
38674373 |
ttcatcatcggaacaagataaagttgttaaaacaatagaacctaaaaaaaggcgggaaagtgaaaactgacggatgcataatcggggtggttagcggtca |
38674472 |
T |
|
| Q |
240 |
tgccggccgcagtttcagcggctaattcatcaagttgacttgtggtgacgcctttgtaaacgccggcacaaactttctgagcgactaaaacagggtcaca |
339 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38674473 |
tgccggcggcagtttcagcggctaattcatcaagttgacttgtggtgacgcctttgtaaacgccggcacaaactttctgagcgactaaaacagggtcaca |
38674572 |
T |
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| Q |
340 |
gtgttcagtgcttaaaccgtaactgagtttcttcaatctcgctgttatcttgtcgaagtgaaccgcctcttg |
411 |
Q |
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| T |
38674573 |
gtgttcagtgcttaaaccgtaactgagtttcttcaatctcgctgttatcttgtcgaagtgaaccgcctcttg |
38674644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 38674234 - 38674335
Alignment:
| Q |
1 |
aaaatcatcaaaacgcaaacacccactcacgtttcagaaaaggatttcagtgtgttcttgtgcagatttgaaacagcaatcctagcagccaactgaatca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38674234 |
aaaatcatcaaaacgcaaacacccactcacgtttcagaaaaggatttcagtgtgttcttgtgcagatttgaaacagcaatcctagcagccaactgaatca |
38674333 |
T |
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| Q |
101 |
at |
102 |
Q |
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|| |
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| T |
38674334 |
at |
38674335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 194 - 411
Target Start/End: Original strand, 38669857 - 38670070
Alignment:
| Q |
194 |
ggaaagtgaaaactgacggatgcataatcggggtggttagcggtcatgccggccgcagtttcagcggctaattcatcaagttgacttgtggtgacgcctt |
293 |
Q |
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|||||| |||||||||| || |||||||| ||||| ||||||||| |||| | | ||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
38669857 |
ggaaagcgaaaactgacagaagcataatcagggtgattagcggtcttgccaacggtggtttcagcggctaattcatcaagttgactggtggcaacgcctt |
38669956 |
T |
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| Q |
294 |
tgtaaacgccggcacaaactttctgagcgactaaaacagggtcacagtgttcagtgcttaaaccgtaactgagtttcttcaatctcgctgttatcttgtc |
393 |
Q |
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|||||| |||||| |||||||||| ||| || ||||||||| |||||||||||||||||||| ||||| ||||| |||||||| || ||||||||||| |
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| T |
38669957 |
tgtaaatgccggcgcaaactttctaagcaaccaaaacaggg--ccagtgttcagtgcttaaaccataactaagttt-ttcaatctagccgttatcttgtc |
38670053 |
T |
|
| Q |
394 |
gaagtgaaccgcctcttg |
411 |
Q |
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|| |||||||||||||| |
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| T |
38670054 |
-aaatgaaccgcctcttg |
38670070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 38669678 - 38669779
Alignment:
| Q |
1 |
aaaatcatcaaaacgcaaacacccactcacgtttcagaaaaggatttcagtgtgttcttgtgcagatttgaaacagcaatcctagcagccaactgaatca |
100 |
Q |
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|||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38669678 |
aaaatcatcaaaacacaaacacccactcacgtttcagcaaacgatttcagtgtgttcttgtgcagatttgaaacagcaatcctagcagccaactgaatca |
38669777 |
T |
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| Q |
101 |
at |
102 |
Q |
| |
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|| |
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| T |
38669778 |
at |
38669779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 159; Significance: 2e-84; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 209 - 411
Target Start/End: Original strand, 2061939 - 2062141
Alignment:
| Q |
209 |
acggatgcataatcggggtggttagcggtcatgccggccgcagtttcagcggctaattcatcaagttgacttgtggtgacgcctttgtaaacgccggcac |
308 |
Q |
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||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
2061939 |
acggatgcataatcggggtggttagcggtcatgccagcggcggtttcagcggctaattcatcaagttgagtggtggtgacgcctttgtaaacgccggcac |
2062038 |
T |
|
| Q |
309 |
aaactttctgagcgactaaaacagggtcacagtgttcagtgcttaaaccgtaactgagtttcttcaatctcgctgttatcttgtcgaagtgaaccgcctc |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||| || |||||||||| |
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| T |
2062039 |
aaactttctgagcgactaaaacagggtcacagtgttcagtgcttaaaccgtaactgagtttctgcaacctcgccgttatcttgtcaaaacgaaccgcctc |
2062138 |
T |
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| Q |
409 |
ttg |
411 |
Q |
| |
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||| |
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| T |
2062139 |
ttg |
2062141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 31 - 101
Target Start/End: Original strand, 2061495 - 2061565
Alignment:
| Q |
31 |
gtttcagaaaaggatttcagtgtgttcttgtgcagatttgaaacagcaatcctagcagccaactgaatcaa |
101 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2061495 |
gtttcagaaaaggattccagtgtgttcttgtgcagatttgaaacagcaatcctaccagccaactgaatcaa |
2061565 |
T |
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