View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13868_low_3 (Length: 413)
Name: NF13868_low_3
Description: NF13868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13868_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 18 - 399
Target Start/End: Original strand, 10339407 - 10339788
Alignment:
| Q |
18 |
atcatattatattggatgggaggacttaaacctgatcctgtcactttcatcctttcacttcttgtagttctttacagtgttgttgtctctcaaagtcttg |
117 |
Q |
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| T |
10339407 |
atcatattatattggatgggaggacttaaacctgatcctgtcactttcatcctttcacttcttgtagttctttacagtgttgttgtctctcaaagtcttg |
10339506 |
T |
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| Q |
118 |
gattagcatttggtgctattttgatggagattaaacaagcaactacactagcttctgtgacaacacttgtttttctcattgctggaggatactatataca |
217 |
Q |
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| T |
10339507 |
gattagcatttggtgctattttgatggagattaaacaagcaactacactagcttctgtgacaacacttgtttttctcattgctggaggatactatataca |
10339606 |
T |
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| Q |
218 |
acagattccacctttcatagtttggcttaagtacttaagctatagctactactgttacaagcttcttcttggtgttcaatacaatgaaaatgattactat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10339607 |
acagattccacctttcatagtttggcttaagtacttaagctatagctactactgttacaagcttcttcttggtgttcaatacaatgaaaatgattactat |
10339706 |
T |
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| Q |
318 |
gaatgttcaaagggagagttgtgcaaggttatggactttcctccaattaaatcaatgggattgaatcatatgtgggttgatg |
399 |
Q |
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| T |
10339707 |
gaatgttcaaagggagagttgtgcaaggttatggactttcctccaattaaatcaatgggattgaatcatatgtgggttgatg |
10339788 |
T |
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