View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13868_low_4 (Length: 326)
Name: NF13868_low_4
Description: NF13868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13868_low_4 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 105 - 326
Target Start/End: Complemental strand, 40561520 - 40561314
Alignment:
| Q |
105 |
atgtgagagttcaatatacaattaaaagttaaacagttcatacattcatcaatgtgatctaccaatccaacttacaataaaaagtttaatatgatataat |
204 |
Q |
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| T |
40561520 |
atgtgagagtccaatatacaattaaaagttaaaaagttcatacattgctcaatgtgatataccaatccaacatacaata---------------tataat |
40561436 |
T |
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| Q |
205 |
agccgagacaaatctaaactaatagaaaaacaagtaaaagttgaatagaccacattatgaacttggaaataggttataagattggactgtcggtagaggt |
304 |
Q |
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| T |
40561435 |
agccgaaacaaatctaaactaatagaaaaacaagtaaaatttgaatagaccacattatgaacttggaaataggttataagattgaactgtcggtagaggt |
40561336 |
T |
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| Q |
305 |
gaaggggttcgagagtttgatt |
326 |
Q |
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| T |
40561335 |
aaagcggttcgagagtttgatt |
40561314 |
T |
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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 40561577 - 40561522
Alignment:
| Q |
14 |
aatacttacatgttttgtcttttcatttctcaaattaatgtatgttggatctaaag |
69 |
Q |
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| T |
40561577 |
aatactcacatgttttgtcttttcatttctcaaattaatgtatgctggatctaaag |
40561522 |
T |
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