View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13869_high_14 (Length: 554)

Name: NF13869_high_14
Description: NF13869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13869_high_14
NF13869_high_14
[»] chr3 (2 HSPs)
chr3 (18-553)||(44994023-44994558)
chr3 (368-402)||(34561178-34561212)
[»] chr8 (5 HSPs)
chr8 (197-400)||(463046-463251)
chr8 (353-386)||(29692462-29692495)
chr8 (368-427)||(39219799-39219855)
chr8 (268-356)||(32736480-32736575)
chr8 (368-400)||(35239576-35239608)
[»] chr6 (4 HSPs)
chr6 (317-400)||(6895877-6895963)
chr6 (292-385)||(3120848-3120939)
chr6 (197-237)||(6896030-6896070)
chr6 (368-400)||(29682237-29682269)
[»] chr5 (1 HSPs)
chr5 (292-433)||(42858150-42858296)
[»] chr4 (2 HSPs)
chr4 (368-408)||(48550418-48550458)
chr4 (368-427)||(46958078-46958134)
[»] chr2 (4 HSPs)
chr2 (320-394)||(38074484-38074561)
chr2 (333-395)||(38988512-38988574)
chr2 (320-385)||(33019098-33019166)
chr2 (368-400)||(30599901-30599933)
[»] chr1 (3 HSPs)
chr1 (332-385)||(2099629-2099683)
chr1 (368-427)||(5930854-5930910)
chr1 (368-400)||(43730044-43730076)


Alignment Details
Target: chr3 (Bit Score: 476; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 18 - 553
Target Start/End: Complemental strand, 44994558 - 44994023
Alignment:
Q  18 agatgacaaaccacaactgtacatgtaaaattcaattgtcaatgttattcctcaaaagtcaattatttattgcaatggatatgagacatgtttacatagc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  44994558 agatgacaaaccacaactgtacatgtaaaattcaattgtcaatgttattcctcaaaagtcaattatttattgcaatggatatgagacatgtttacttagc 44994459  T
Q  118 ctaggttgataatctgacatgatatctgtactgaagagaaaattggtgtttattagttccatttttagaaagatcgaagttgattatgatatgtttggtt 217  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44994458 ctaggtcgataatctgacatgatatctgtactgaagagaaaattggtgtttattagttccatttttagaaagatcgaagttgattatgatatgtttggtt 44994359  T
Q  218 gttgtcgagtataatcgatttcgtttttataatttcttctgctcgtagtcaagatttgtaatttttaattgcacaattaattttcacacacaaatatata 317  Q
    ||||||||||| ||||||||| |||||||||||| |||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  44994358 gttgtcgagtagaatcgattttgtttttataattgcttctggtcgtagtcaagatttgtagcttttaattgcacaattaattttcacacacaaatatata 44994259  T
Q  318 attcacttttacatatgtatccaaatacaaatcattttagtcaaaatgatttttaaccaaaatcaattttatcaaaattaattcttcccactgccgcaca 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||    
T  44994258 attcacttttacatatgtatccaaatacaaatcattttagtcaaaatgatttctaaccaaaatcaattttaccaaaattaattcttcccaccgccgcaca 44994159  T
Q  418 accaaacacaaacataaaatgacctaaattgttagtctagaatgaatgacagttgagttaagggttagcttatattcagataactaaatagtgatatgtc 517  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  44994158 accaaacgcaaacataaaatgacctaaattgttagtctagaatgaatgacagtcgagttaagggttagcttatattcagataactaaatagtgatatgtc 44994059  T
Q  518 gagctagcaaccatagattacgagttagttaaatct 553  Q
    |||||||| ||||||||||||| |||||||||||||    
T  44994058 gagctagcgaccatagattacgggttagttaaatct 44994023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 368 - 402
Target Start/End: Original strand, 34561178 - 34561212
Alignment:
Q  368 ttttaaccaaaatcaattttatcaaaattaattct 402  Q
    |||||||||||||||||||||||||| ||||||||    
T  34561178 ttttaaccaaaatcaattttatcaaacttaattct 34561212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 197 - 400
Target Start/End: Complemental strand, 463251 - 463046
Alignment:
Q  197 ttgattatgatatgtttggttgttgtcgagtataatcgatttcgtttttataatttcttctgctcgtagtcaagatttgtaatttttaattgcacaatta 296  Q
    |||||| | |||||||||||||||||| |||| ||| ||||| ||||||| ||||  ||||  | | |   |||||||||| ||| | |||  | ||||     
T  463251 ttgattctaatatgtttggttgttgtctagtagaattgattttgtttttagaattaattctatttgaaactaagatttgtagtttatgattctagaattt 463152  T
Q  297 attttcacacacaaatatataattcacttttacat--atgtatccaaatacaaatcattttagtcaaaatgatttttaaccaaaatcaattttatcaaaa 394  Q
    ||||||||| | |||| |||| || | |||||| |  ||||||||||||| |||| |||||| ||||||| | |||||| || |||||||| ||||||||    
T  463151 attttcacaaagaaatttatagtttaattttacgtcaatgtatccaaatataaattattttaatcaaaatcacttttaatcataatcaattatatcaaaa 463052  T
Q  395 ttaatt 400  Q
    ||||||    
T  463051 ttaatt 463046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 386
Target Start/End: Complemental strand, 29692495 - 29692462
Alignment:
Q  353 tttagtcaaaatgatttttaaccaaaatcaattt 386  Q
    |||||||||||| |||||||||||||||||||||    
T  29692495 tttagtcaaaatcatttttaaccaaaatcaattt 29692462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 427
Target Start/End: Original strand, 39219799 - 39219855
Alignment:
Q  368 ttttaaccaaaatcaattttatcaaaattaattcttcccactgccgcacaaccaaacaca 427  Q
    ||||||| |||||||||| |||||||||||||| || |||   |||||||||||||||||    
T  39219799 ttttaacgaaaatcaattctatcaaaattaattttttcca---ccgcacaaccaaacaca 39219855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 268 - 356
Target Start/End: Original strand, 32736480 - 32736575
Alignment:
Q  268 aagatttgtaatttttaattgcacaattaattttcacacacaaatatata-----attcacttttacat--atgtatccaaatacaaatcatttta 356  Q
    |||||||||| ||||| |||  | |||||||||| |||||||||| ||||     ||||||||||||||  |||||| ||||||||||| ||||||    
T  32736480 aagatttgtagttttttattttaaaattaatttttacacacaaatttatagttcaattcacttttacatgaatgtattcaaatacaaattatttta 32736575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 368 - 400
Target Start/End: Original strand, 35239576 - 35239608
Alignment:
Q  368 ttttaaccaaaatcaattttatcaaaattaatt 400  Q
    |||||||||||||||||||||||||||| ||||    
T  35239576 ttttaaccaaaatcaattttatcaaaatcaatt 35239608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 317 - 400
Target Start/End: Complemental strand, 6895963 - 6895877
Alignment:
Q  317 aattcacttttacat--atgtatccaaatacaaatca-ttttagtcaaaatgatttttaaccaaaatcaattttatcaaaattaatt 400  Q
    |||||||||||||||  ||||||| ||| ||||| || ||||||||||||| | |||||||||||||||||| ||||||||| ||||    
T  6895963 aattcacttttacatgaatgtatcaaaaaacaaaccacttttagtcaaaattagttttaaccaaaatcaattctatcaaaatcaatt 6895877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 385
Target Start/End: Original strand, 3120848 - 3120939
Alignment:
Q  292 aattaattttcacacacaaatatataattcacttttacatatgtatccaaatacaaatcatt-ttagtcaaaatgatttttaaccaaaatcaatt 385  Q
    |||| |||||||||||||||| | ||||||| ||| || |   |||||||| | |||||||| ||||||| ||| ||||||||||||||||||||    
T  3120848 aatttattttcacacacaaatttgtaattcagtttcactt---tatccaaacataaatcattgttagtcagaatcatttttaaccaaaatcaatt 3120939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 6896070 - 6896030
Alignment:
Q  197 ttgattatgatatgtttggttgttgtcgagtataatcgatt 237  Q
    |||||||||| ||||||||||||||||||||| ||| ||||    
T  6896070 ttgattatgacatgtttggttgttgtcgagtacaattgatt 6896030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 368 - 400
Target Start/End: Original strand, 29682237 - 29682269
Alignment:
Q  368 ttttaaccaaaatcaattttatcaaaattaatt 400  Q
    |||||||||||||||||| ||||||||||||||    
T  29682237 ttttaaccaaaatcaattctatcaaaattaatt 29682269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 433
Target Start/End: Original strand, 42858150 - 42858296
Alignment:
Q  292 aattaattttcacacacaaatatataattca-----cttttacat--atgtatccaaatacaaatca-ttttagtcaaaatgatttttaaccaaaatcaa 383  Q
    |||| |||||||||||||||| |||| ||||     |||||||||  || ||| |||| ||| |||| ||||||||| ||| ||||||||||||||||||    
T  42858150 aattgattttcacacacaaatttatagttcaactcacttttacatgaatttattcaaacacagatcacttttagtcagaatcatttttaaccaaaatcaa 42858249  T
Q  384 ttttatcaaaattaattcttcccactgccgcacaaccaaacacaaacata 433  Q
    || ||||||||  |||||| | ||||    |||||||||||||| |||||    
T  42858250 ttctatcaaaaccaattctcctcact---ccacaaccaaacacacacata 42858296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 408
Target Start/End: Complemental strand, 48550458 - 48550418
Alignment:
Q  368 ttttaaccaaaatcaattttatcaaaattaattcttcccac 408  Q
    |||||||||||||||||| ||||||||| ||||||||||||    
T  48550458 ttttaaccaaaatcaattctatcaaaatcaattcttcccac 48550418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 427
Target Start/End: Original strand, 46958078 - 46958134
Alignment:
Q  368 ttttaaccaaaatcaattttatcaaaattaattcttcccactgccgcacaaccaaacaca 427  Q
    |||||||||||||||||| ||||||||| |||| || |||   |||||||||||||||||    
T  46958078 ttttaaccaaaatcaattctatcaaaatcaattttttcca---ccgcacaaccaaacaca 46958134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 320 - 394
Target Start/End: Original strand, 38074484 - 38074561
Alignment:
Q  320 tcacttttacata--tgtatccaaatacaaatca-ttttagtcaaaatgatttttaaccaaaatcaattttatcaaaa 394  Q
    |||||||||||||  |||||  |||||||||| | ||||||| | ||| | |||||||||||||||||||||||||||    
T  38074484 tcacttttacataaatgtatttaaatacaaataacttttagtaataattaattttaaccaaaatcaattttatcaaaa 38074561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 333 - 395
Target Start/End: Complemental strand, 38988574 - 38988512
Alignment:
Q  333 tgtatccaaatacaaatcattttagtcaaaatgatttttaaccaaaatcaattttatcaaaat 395  Q
    ||||||||||||||||||| ||||||| |||  | |||||||||| | ||||| |||||||||    
T  38988574 tgtatccaaatacaaatcactttagtccaaaataattttaaccaacaccaattctatcaaaat 38988512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 385
Target Start/End: Complemental strand, 33019166 - 33019098
Alignment:
Q  320 tcacttttacat--atgtatccaaatacaaatca-ttttagtcaaaatgatttttaaccaaaatcaatt 385  Q
    ||||||||||||  ||| ||||||| |||||||| ||||||||| ||| | ||||||||||||||||||    
T  33019166 tcacttttacatgaatgcatccaaacacaaatcacttttagtcagaatcacttttaaccaaaatcaatt 33019098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 368 - 400
Target Start/End: Complemental strand, 30599933 - 30599901
Alignment:
Q  368 ttttaaccaaaatcaattttatcaaaattaatt 400  Q
    |||||||||||||||||| ||||||||||||||    
T  30599933 ttttaaccaaaatcaattctatcaaaattaatt 30599901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 332 - 385
Target Start/End: Complemental strand, 2099683 - 2099629
Alignment:
Q  332 atgtatccaaatacaaatca-ttttagtcaaaatgatttttaaccaaaatcaatt 385  Q
    ||||||||||| |||||||| ||||| ||||||| | ||||||||||||||||||    
T  2099683 atgtatccaaacacaaatcacttttactcaaaattacttttaaccaaaatcaatt 2099629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 427
Target Start/End: Original strand, 5930854 - 5930910
Alignment:
Q  368 ttttaaccaaaatcaattttatcaaaattaattcttcccactgccgcacaaccaaacaca 427  Q
    |||||||||||||||||| |||| ||||||||| || |||   |||||||||||||||||    
T  5930854 ttttaaccaaaatcaattctatctaaattaattttttcca---ccgcacaaccaaacaca 5930910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 368 - 400
Target Start/End: Complemental strand, 43730076 - 43730044
Alignment:
Q  368 ttttaaccaaaatcaattttatcaaaattaatt 400  Q
    |||||||||||||||||| ||||||||||||||    
T  43730076 ttttaaccaaaatcaattatatcaaaattaatt 43730044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University