View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13869_high_15 (Length: 536)
Name: NF13869_high_15
Description: NF13869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13869_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 416; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 5 - 520
Target Start/End: Complemental strand, 2152109 - 2151579
Alignment:
| Q |
5 |
aatccaaattaacacattagggacgagtaacactatgattagagtaggcattgctttacacaaagattttgttttatctcacatagttgacaatcaatat |
104 |
Q |
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| T |
2152109 |
aatccaaattaacacattagggacgagtaacactatgattagagtaggcattgctttacacaaagattttgttttatctcacatagttgacaatcaatat |
2152010 |
T |
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| Q |
105 |
ttcaatttagtgattcacacc---------actctcatatctaatggctaccttgaaaatttatttctcatttcccatattgatcttgctttttcactca |
195 |
Q |
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| T |
2152009 |
ttcaatttagtgattcacacctcaagcaccactctcatatctaatggctaccttgaaaatttatttctcatttcccatattgatcttgctttttcactca |
2151910 |
T |
|
| Q |
196 |
acaaaaagcacagctccaatttgtgacaagagacattgtggaaactcgtcggaacnnnnnnnngcgttccctttccaattaagagaagaaaatcaaatta |
295 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||| | | |||||| |||||||||||| ||||||||||||||| |
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| T |
2151909 |
acaaaaagcacagctccaatgtgtgacaagagacattgtggaaactcgtcggatcttttttttgagttcccattccaattaagaaaagaaaatcaaatta |
2151810 |
T |
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| Q |
296 |
acaatgctcaaagtgatcgatgtgtgtacccaggatttgaagttgtttgcaagaataaccaacctttgattacactctcaaatggaagagaatttgctgt |
395 |
Q |
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| T |
2151809 |
acaatgctcaaagtgatcgatgtgtgtacccaggatttgaagttgtttgcaagaataagcaacctttgattacactctcaaatggaagagaatttgttgt |
2151710 |
T |
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| Q |
396 |
caaacatatttatcatgagagacaaagaattttggtcaaggatctcaatgattgtccaccaagaaggttcattcaaaacatag------acatcgacgat |
489 |
Q |
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| T |
2151709 |
caaacatatttaccgtgagagacaaagaattttggtcaaggatctcaatgattgtccaccaagaaggttcattcaaaacatagacatagacatcgacgat |
2151610 |
T |
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| Q |
490 |
gattcacctttccaattggacaagtcttatg |
520 |
Q |
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| T |
2151609 |
gattcacctttccaattggacaagtcttatg |
2151579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 262 - 504
Target Start/End: Complemental strand, 2146433 - 2146191
Alignment:
| Q |
262 |
ttccctttccaattaagagaagaaaatcaaattaacaatgctcaaagtgatcgatgtgtgtacccaggatttgaagttgtttgcaagaataaccaacctt |
361 |
Q |
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| T |
2146433 |
ttccctttccaattaagagaagaaaatcaaattagcaataatcaaagtgatcgatgtgtgtacccaggctttgaagttgtttgcaaaaataagcaacctt |
2146334 |
T |
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| Q |
362 |
tgattacactctcaaatggaagagaatttgctgtcaaacatatttatcatgagagacaaagaattttggtcaaggatctcaatgattgtccaccaagaag |
461 |
Q |
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| T |
2146333 |
tgattacactctcaaatggaaaagaatatgttatcaaaaatatatcctatgagagccaaagaatatggatggatgatcccaatgattgtccaccaagaag |
2146234 |
T |
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| Q |
462 |
gttcattcaaaacatagacatcgacgatgattcacctttccaa |
504 |
Q |
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| T |
2146233 |
gttccttcaaaacatagacctcaacgatgattcacttttccaa |
2146191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 303 - 511
Target Start/End: Complemental strand, 2142267 - 2142058
Alignment:
| Q |
303 |
tcaaagtgatcgatgtgtgtacccaggatttgaagttgtttgcaagaata---accaacctttgattacactctcaaatggaagagaatttgctgtcaaa |
399 |
Q |
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| T |
2142267 |
tcaaagtgatcgatgtgggtacccaggatttgaagtttattgcaacaatatgaaccaacctttgattacactctcaaatggaagagaatttattgtcaaa |
2142168 |
T |
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| Q |
400 |
catatttatcatgagagacaaagaattttggtcaaggatctcaatgattgtccaccaagaaggttcattcaaaacatagacatcgacgatgattcacctt |
499 |
Q |
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| T |
2142167 |
aaattttcccatgcaagtcaaagaatttggttggatgatcctaatggttgttcaccaagacggttcctt--gaacatagacctcaacaatgattcacctt |
2142070 |
T |
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| Q |
500 |
tccaattggaca |
511 |
Q |
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|||||| ||||| |
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| T |
2142069 |
tccaatgggaca |
2142058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 130 - 219
Target Start/End: Complemental strand, 2142429 - 2142340
Alignment:
| Q |
130 |
tcatatctaatggctaccttgaaaatttatttctcatttcccatattgatcttgctttttcactcaacaaaaagcacagctccaatttgt |
219 |
Q |
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| T |
2142429 |
tcatatctaatggctaccatgaaaatttctttcatattttccatagtcctcttgctttttcactcaacaagaagcagagctccaatttgt |
2142340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 126 - 212
Target Start/End: Complemental strand, 2146599 - 2146513
Alignment:
| Q |
126 |
actctcatatctaatggctaccttgaaaatttatttctcatttcccatattgatcttgctttttcactcaacaaaaagcacagctcc |
212 |
Q |
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|||||||| |||||||||||||||| ||||| ||| |||| ||||| | ||||||||||||||||||||||||||||| |||| |
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| T |
2146599 |
actctcattactaatggctaccttgagaatttcattcatattttccatagttctcttgctttttcactcaacaaaaagcacaactcc |
2146513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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