View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13869_high_16 (Length: 533)
Name: NF13869_high_16
Description: NF13869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13869_high_16 |
 | |
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| [»] scaffold0769 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 18 - 340
Target Start/End: Original strand, 29312173 - 29312495
Alignment:
| Q |
18 |
aaaagtaatattgagagtgatgaaataaaagtggctggatataagcctgactctgatcatgttcttcatgatattgatcaagaggaaaaagctgagaatc |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29312173 |
aaaagtaatattgagagtgatgaaataaaagtggctggatataagcctgactctgatcatgttcttcatgatattgatcaagaggaaaaagctgagaatc |
29312272 |
T |
|
| Q |
118 |
tttatgaccatagtgagaagcttgcggttgcattcgggatacttaatttgaatggacagtcgatgatatggtttataagaatttgagaatatgtggtgat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29312273 |
tttatgaccatagtgagaagcttgcggttgcattcgggatacttaatttgaatggacagtcgatgatatggtttataagaatttgagaatatgtggtgat |
29312372 |
T |
|
| Q |
218 |
tgtcacaatgccattaagtatatgtctaaggttgttagagtgattattgttgttagcgaccccttgaggttttatcacttcaaaaatgaaaattgttctt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29312373 |
tgtcacaatgccattaagtatatgtctaaggttgttagagtgattattgttgttagcgaccccttgaggttttatcacttcaaaaatgaaaattgttctt |
29312472 |
T |
|
| Q |
318 |
gtaatgatttatggtgaatattt |
340 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
29312473 |
gtaatgatttatggtgaatattt |
29312495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 40 - 414
Target Start/End: Complemental strand, 34635670 - 34635297
Alignment:
| Q |
40 |
aaataaaagtggctggatataagcctgactctgatcatgttcttcatgatattgatcaagaggaaaaagctgagaatctttatgaccatagtgagaagct |
139 |
Q |
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||||||||| |||||||||||||| ||| ||||| ||||||| ||||||||||||||||||||||||| ||||| ||||| | | |||||||||||||| |
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| T |
34635670 |
aaataaaagcggctggatataagc--gacactgataatgttctgcatgatattgatcaagaggaaaaagttgagagtctttgtaagcatagtgagaagct |
34635573 |
T |
|
| Q |
140 |
tgcggttgcattcgggatacttaatttgaatggacagtcgatgatatg-gtttataagaatttgagaatatgtggtgattgtcacaatgccattaagtat |
238 |
Q |
| |
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||| |||||||| |||||||||||||||||||| ||||||| |||| | |||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34635572 |
tgccgttgcatttgggatacttaatttgaatgggcagtcgacgatacgagtttttaagaatttgagaatatgtggtgattgtcacaatgccattaagtat |
34635473 |
T |
|
| Q |
239 |
atgtctaaggttgttagagtgattattgttgttagcgaccccttgaggttttatcacttcaaaaatgaaaattgttcttgtaatgatttatggtgaatat |
338 |
Q |
| |
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||| ||||||||||| ||||| |||||||| || ||| |||| |||||| ||||||||||||||| ||||||||| |||||||||||||||||| ||| |
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| T |
34635472 |
atggctaaggttgttgatgtgatgattgttgtcagagactccttcaggtttcatcacttcaaaaatggaaattgttcatgtaatgatttatggtgactat |
34635373 |
T |
|
| Q |
339 |
ttgactcaggttattgagagtaagtggtcgcactgatcctatctgagcatgtctaactcaaatttcattagactgt |
414 |
Q |
| |
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|||||| || |||||| || |||| |||| || ||||||||||||||| | || ||||||||||| |||||||||| |
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|
| T |
34635372 |
ttgactaagattattgggaataaggggtcacaatgatcctatctgagcctttccaactcaaattttattagactgt |
34635297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 43 - 406
Target Start/End: Complemental strand, 29054828 - 29054467
Alignment:
| Q |
43 |
taaaagtggctggatataagcctgactctgatcatgttcttcatgatattgatcaagaggaaaaagctgagaatctttatgaccatagtgagaagcttgc |
142 |
Q |
| |
|
|||||||||| ||||||||| ||||| ||||| |||||||| ||||||| || |||||||||| |||||||||||| | ||||||||||||||||||| |
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| T |
29054828 |
taaaagtggccggatataaggctgacactgattatgttcttggtgatattaat--agaggaaaaaactgagaatctttgtaaccatagtgagaagcttgc |
29054731 |
T |
|
| Q |
143 |
ggttgcattcgggatacttaatttgaatggacagtcgatgatatggtttataagaatttgagaatatgtggtgattgtcacaatgccattaagtatatgt |
242 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| || ||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
29054730 |
tgttgcatttgggatacttaatttgaatggacagtcgacaatgcggtttttaaaaatttgagaatatgtggtgattgtcacaatgccatttagtatatgt |
29054631 |
T |
|
| Q |
243 |
ctaaggttgttagagtgattattgttgttagcgaccccttgaggttttatcacttcaaaaatgaaaattgttcttgtaatgatttatggtgaatatttga |
342 |
Q |
| |
|
|||| |||||| | ||||||||| |||||| ||| ||||||||||||||||||||||||||| || |||||||||||| || ||||||||| ||||||| |
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|
| T |
29054630 |
ctaaagttgtttgtgtgattattactgttagagactccttgaggttttatcacttcaaaaatggaagttgttcttgtaaagacttatggtgattatttga |
29054531 |
T |
|
| Q |
343 |
ctcaggttattgagagtaagtggtcgcactgatcctatctgagcatgtctaactcaaatttcat |
406 |
Q |
| |
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||||| |||||| || |||| |||| || ||| ||||| ||||| ||||||||||||||||||| |
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| T |
29054530 |
ctcagattattgggaataagaggtcacaatgaccctatttgagcgtgtctaactcaaatttcat |
29054467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 369 - 525
Target Start/End: Original strand, 29312496 - 29312652
Alignment:
| Q |
369 |
cactgatcctatctgagcatgtctaactcaaatttcattagactgtcggtgactctcgtgtgtacgaactcacttgcccgactctctcccacttgcttga |
468 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29312496 |
cactgatcctatctgagcatgtctaactcaaatttcattagactgtcggtgactctcgtgtgtacgaactcacttgcccgactctctcccacttgcttga |
29312595 |
T |
|
| Q |
469 |
gcatctctctatgaaccctctctttgattgtgttctttattctctcaaattcatctc |
525 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29312596 |
gcatctctctatgaaccctctctttgattgtgttctttattctctcaaattcatctc |
29312652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0769 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: scaffold0769
Description:
Target: scaffold0769; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 40 - 414
Target Start/End: Original strand, 4244 - 4617
Alignment:
| Q |
40 |
aaataaaagtggctggatataagcctgactctgatcatgttcttcatgatattgatcaagaggaaaaagctgagaatctttatgaccatagtgagaagct |
139 |
Q |
| |
|
||||||||| |||||||||||||| ||| ||||| ||||||| ||||||||||||||||||||||||| ||||| ||||| | | |||||||||||||| |
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|
| T |
4244 |
aaataaaagcggctggatataagc--gacactgataatgttctgcatgatattgatcaagaggaaaaagttgagagtctttgtaagcatagtgagaagct |
4341 |
T |
|
| Q |
140 |
tgcggttgcattcgggatacttaatttgaatggacagtcgatgatatg-gtttataagaatttgagaatatgtggtgattgtcacaatgccattaagtat |
238 |
Q |
| |
|
||| |||||||| |||||||||||||||||||| ||||||| |||| | |||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4342 |
tgccgttgcatttgggatacttaatttgaatgggcagtcgacgatacgagtttttaagaatttgagaatatgtggtgattgtcacaatgccattaagtat |
4441 |
T |
|
| Q |
239 |
atgtctaaggttgttagagtgattattgttgttagcgaccccttgaggttttatcacttcaaaaatgaaaattgttcttgtaatgatttatggtgaatat |
338 |
Q |
| |
|
||| ||||||||||| ||||| |||||||| || ||| |||| |||||| ||||||||||||||| ||||||||| |||||||||||||||||| ||| |
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|
| T |
4442 |
atggctaaggttgttgatgtgatgattgttgtcagagactccttcaggtttcatcacttcaaaaatggaaattgttcatgtaatgatttatggtgactat |
4541 |
T |
|
| Q |
339 |
ttgactcaggttattgagagtaagtggtcgcactgatcctatctgagcatgtctaactcaaatttcattagactgt |
414 |
Q |
| |
|
|||||| || |||||| || |||| |||| || ||||||||||||||| | || ||||||||||| |||||||||| |
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|
| T |
4542 |
ttgactaagattattgggaataaggggtcacaatgatcctatctgagcctttccaactcaaattttattagactgt |
4617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 40 - 414
Target Start/End: Original strand, 28743679 - 28744054
Alignment:
| Q |
40 |
aaataaaagtggctggatataagcctgactctgatcatgttcttcatgatattgatcaagaggaaaaagctgagaatctttatgaccatagtgagaagct |
139 |
Q |
| |
|
|||| ||| |||||||||||||||||||| ||||| ||||||| || |||||||||||||||||||||||||||| ||| | | |||||||||||||||| |
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|
| T |
28743679 |
aaatgaaaatggctggatataagcctgacactgattatgttctgcaagatattgatcaagaggaaaaagctgagagtctctgtaaccatagtgagaagct |
28743778 |
T |
|
| Q |
140 |
tgcggttgcattcgggatacttaatttgaatggacagtcgatgatatgg-tttataagaatttgagaatatgtggtgattgtcacaatgccattaagtat |
238 |
Q |
| |
|
||| ||||| || |||||||||||||||||||||||||||| ||| || ||| |||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
28743779 |
tgctgttgcctttgggatacttaatttgaatggacagtcgacaatacgggtttttaagaatttgagaatatgcggtgattgtcacaatgccattaagtat |
28743878 |
T |
|
| Q |
239 |
atgtctaaggttgttagagtgattattgttgttagcgaccccttgaggttttatcacttcaaaaatgaaaattgttcttgtaatgatttatggtgaatat |
338 |
Q |
| |
|
|||||||||||||| | || || |||||||| || ||| ||||||||||| ||||||||||||||| ||||||||||||||| || ||||||||| ||| |
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|
| T |
28743879 |
atgtctaaggttgtcggtgttataattgttgtcagagactccttgaggtttcatcacttcaaaaatggaaattgttcttgtaaagacttatggtgattat |
28743978 |
T |
|
| Q |
339 |
ttgactcaggttattgagagtaagtggtcgcactgatcctatctgagcatgtctaactcaaatttcattagactgt |
414 |
Q |
| |
|
|||| |||| |||||| || |||||||| | | |||||||||||| |||||||||||||||| |||||||||| |
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|
| T |
28743979 |
ttgaatcagattattgggattaagtggtgacgataatcctatctgagtttgtctaactcaaatttgattagactgt |
28744054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 40 - 347
Target Start/End: Complemental strand, 13792563 - 13792255
Alignment:
| Q |
40 |
aaataaaagtggctggatataagcctgactctgatcatgttcttcatgatattgatcaagaggaaaaagctgagaatctttatgaccatagtgagaagct |
139 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||| ||||| | |||||||||||||||| |
|
|
| T |
13792563 |
aaataaaagcggctggatataagcctgacactgattatgttctgcatgatattgatcaagaggaaaaagctgagagtctttgtaaccatagtgagaagct |
13792464 |
T |
|
| Q |
140 |
tgcggttgcattcgggatacttaatttgaatggacagtcgatgata-tggtttataagaatttgagaatatgtggtgattgtcacaatgccattaagtat |
238 |
Q |
| |
|
||| |||||||| |||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
13792463 |
tgctgttgcatttgggatacttaatttgaatggacagtcgacgatacgggtttttaagaatttgagaatatgtggtgattgtcataatgccattaagtat |
13792364 |
T |
|
| Q |
239 |
atgtctaaggttgttagagtgattattgttgttagcgaccccttgaggttttatcacttcaaaaatgaaaattgttcttgtaatgatttatggtgaatat |
338 |
Q |
| |
|
||||| || |||||| | |||| ||||| || || ||| ||||||||||| ||||||||||||||| ||||||||||||||| ||||| |||||| ||| |
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|
| T |
13792363 |
atgtccaatgttgttggtgtgacgattgtcgtcagagactccttgaggtttcatcacttcaaaaatggaaattgttcttgtaaagatttttggtgattat |
13792264 |
T |
|
| Q |
339 |
ttgactcag |
347 |
Q |
| |
|
||||||||| |
|
|
| T |
13792263 |
ttgactcag |
13792255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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