View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13869_high_20 (Length: 435)
Name: NF13869_high_20
Description: NF13869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13869_high_20 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 9 - 420
Target Start/End: Complemental strand, 23891895 - 23891484
Alignment:
| Q |
9 |
ctagtttactggattcctaaaacaggctgcacaatccctccaaatgcttctcatcgcgtaagcattggcgccattgtcttgaataataagaaagaggtat |
108 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23891895 |
ctagtatactggattcctaaaacaggctgcacaattcctccaaatgcttctcatcgcgtaagcattggcgccattgtcttgaataataagaaagaggtat |
23891796 |
T |
|
| Q |
109 |
aaaataagtttcaatccaatagtgattcttatatctacatgttttctttgcatacattaactttgttttatgctgccattctagttgcttgtagtacaag |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
23891795 |
aaaataagtttcaatccaatagtgattcttatatctacatgttttctttgcatacattaactttgttttatgatgccattctagttgcttgtagtacaag |
23891696 |
T |
|
| Q |
209 |
aaaaaagaggtagatttcatggaattggtgtttggaagctacctactggagtagttgatgcagtatgcaaattttcaaagacgaattaaatttcatcttc |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
23891695 |
aaaaaagaggtagatttcatggaattggtgtttggaagctacctactggagtagttgatgcagtatgcacattttcaaagacaaattaaatttcatctta |
23891596 |
T |
|
| Q |
309 |
aaaaattacaatttgtttagaaagttggtttttgtacctgcagggtgaggagatttttgaagcagctattagagaagtaaaagaagagacaggagtaagt |
408 |
Q |
| |
|
||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23891595 |
aaaaattacaaattggttagaaacttggtttttgtacctgcagggtgaggagatttttgaagcagctattagagaagtaaaagaagagacaggagtaagt |
23891496 |
T |
|
| Q |
409 |
atcttaatacat |
420 |
Q |
| |
|
|||||||||||| |
|
|
| T |
23891495 |
atcttaatacat |
23891484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University