View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13869_high_39 (Length: 253)
Name: NF13869_high_39
Description: NF13869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13869_high_39 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 12 - 236
Target Start/End: Complemental strand, 44994027 - 44993802
Alignment:
| Q |
12 |
aatctttctttgggcaaaagagtttcaccaaagttgtggaggtgtcataattcgtctaaaatacttggaatagacaatttgacccaaacttgtgttctat |
111 |
Q |
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| T |
44994027 |
aatctttcttaaggcaaaagagtttcaccaaagttgtggaggtgtcataattcgtctaaaatacttggaatagacaatttgacccaaacttgtgttctat |
44993928 |
T |
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| Q |
112 |
gccaaaacatgacaaatatgacaaaatgtgggccatcatctagacgcatcaacattaaaaaacttatgcgttatttacaaatttatccga-ttttttaat |
210 |
Q |
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| T |
44993927 |
gacaaaacatgacaaatatgacaaaatgtgggccatcatctagacgcaacaacattaaaaaacttatgcgttatttgcaaatttatccgacttttttaat |
44993828 |
T |
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| Q |
211 |
aacaaatgttaatatgataattatta |
236 |
Q |
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|||||||||||||||||||||||||| |
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| T |
44993827 |
aacaaatgttaatatgataattatta |
44993802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 201 - 243
Target Start/End: Original strand, 46612906 - 46612948
Alignment:
| Q |
201 |
attttttaataacaaatgttaatatgataattattatgttagt |
243 |
Q |
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| T |
46612906 |
attttttaataacaaatgttaatatgttaattgttatgttagt |
46612948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 243
Target Start/End: Complemental strand, 20494063 - 20494022
Alignment:
| Q |
202 |
ttttttaataacaaatgttaatatgataattattatgttagt |
243 |
Q |
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| T |
20494063 |
ttttttaatgacaaatgttagtatgttaattattatgttagt |
20494022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 15873842 - 15873802
Alignment:
| Q |
203 |
tttttaataacaaatgttaatatgataattattatgttagt |
243 |
Q |
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||||||||||||||||||| |||| ||||| |||||||||| |
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| T |
15873842 |
tttttaataacaaatgttagtatgttaattgttatgttagt |
15873802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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