View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13869_high_6 (Length: 716)
Name: NF13869_high_6
Description: NF13869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13869_high_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 155 - 692
Target Start/End: Original strand, 25030450 - 25030987
Alignment:
| Q |
155 |
tacctgaagaataatacagaatggcttcaattcttgtatcagcacaaacaaatcaaacttgttacccaccatgtttttgagatgttggctctcctgtggt |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25030450 |
tacctgaagaataatacagaatggcttcaactcttgcataaacacaaacaaatcaaacttgttacccaccatgtttttgagatgttggctctcctgtggt |
25030549 |
T |
|
| Q |
255 |
acttgcagagactccgacgatcaagttagtaaagaattcaataacaggacaataattttgatnnnnnnnngaacagatcatgcattaataattaagaaat |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
25030550 |
acttgcagagactccgacgatcaagttagtaaagaattcaataacaggacaataattttgataaaaataagaacagatcatgcattaataattaacaaat |
25030649 |
T |
|
| Q |
355 |
gaagattaaccatggtaaatttgttcatacctttcttacctacacagaagcagcgatttattataaatttgttaccattcttaacggagtgacatcaaaa |
454 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
25030650 |
gaagattaaccatggtaaatttgttcttacctttcttacctacacagaagcagcgatttattataaatttgttacctttcttaacggagtgacatcaaaa |
25030749 |
T |
|
| Q |
455 |
ttctcannnnnnnnnnnnnnnnnnnctctaaagcctctttgctgttgaccttagttagaagttcctgcaannnnnnngtgtaagtctcaattataatctc |
554 |
Q |
| |
|
|||||| ||| |||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
25030750 |
ttctcattttcttttttctttcttcctccaaagcctctttggtgttgaccttagttagaagttcctgtaatttttttttgtaagtctcaattataatctc |
25030849 |
T |
|
| Q |
555 |
aatatcaagacggcgaactgcttcaatagtatactctgtgtgtcttcgtttctttggagcaggcggaggcgatggggtttcagccgtaataacaaatgaa |
654 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
25030850 |
aatatcaagacggcgaactgcttcgatagtatgctctgtgtgtcttcgtttctttggagcaggcggaggcgatggggtttcagccgtaataacaaatgga |
25030949 |
T |
|
| Q |
655 |
tatgaggaaattggcgttcgtggcgatgaatccatcgg |
692 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
25030950 |
tatgaggaaattggcgttcgtgacgatgaatccatcgg |
25030987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 25030041 - 25030082
Alignment:
| Q |
34 |
gcctcggcctcacagcatactccacaccaccgtccataaccc |
75 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25030041 |
gcctcggcctcacagcatactccacaccaccgtccataaccc |
25030082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University