View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13869_low_1 (Length: 829)

Name: NF13869_low_1
Description: NF13869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13869_low_1
NF13869_low_1
[»] chr8 (2 HSPs)
chr8 (34-812)||(594484-595262)
chr8 (496-571)||(26946561-26946636)
[»] chr1 (3 HSPs)
chr1 (157-375)||(28168753-28168972)
chr1 (507-571)||(28169915-28169979)
chr1 (327-375)||(27925051-27925099)
[»] chr7 (1 HSPs)
chr7 (496-560)||(1755122-1755186)
[»] chr5 (2 HSPs)
chr5 (691-804)||(37550722-37550835)
chr5 (691-804)||(37653551-37653664)
[»] chr4 (2 HSPs)
chr4 (157-375)||(22476755-22476977)
chr4 (514-563)||(22475812-22475861)
[»] chr2 (2 HSPs)
chr2 (668-804)||(39925810-39925946)
chr2 (703-779)||(39915631-39915707)
[»] chr3 (1 HSPs)
chr3 (683-744)||(45085054-45085115)


Alignment Details
Target: chr8 (Bit Score: 717; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 717; E-Value: 0
Query Start/End: Original strand, 34 - 812
Target Start/End: Complemental strand, 595262 - 594484
Alignment:
Q  34 agagagggcgacagacaatccatccaagatttatacgttcatttgagtacttagtcgactacttatgaacccgtgataagttgtaaaagcaaaactgcaa 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  595262 agagagggcgacagacaatccatccaagatttatacgttcatttgagtacttagtcgactacttatgaacccgtgataagttgtaaaagcaaaactgcaa 595163  T
Q  134 gggtacaaatctgcaaattaatgatgaactttggaaaatattcttgctttactctcatttcagaaaacatagcccatatacatgaatcctagaatgcaaa 233  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  595162 tggtacaaatctgcaaattaatgatgaactttggaaaatattcttgctttactctcatttcagaaaacatagcccatatacatgaatcctagaatgcaaa 595063  T
Q  234 tccttaaagaacaataagaaaaatattattcatttgcatcgacagtttaagattcttacggcaaagctttcttatgcggatccttaaagaacccacaaat 333  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  595062 tccttaaagaacaataagaaaaatattattcatttgcattgacagtttaagattcttacggcaaagctttcttatgcggatccttaaagaacccacaaat 594963  T
Q  334 aaatggttgcgaaaggttcatcatgaagaccttcacaagggaagaatcgtacctaaagattcagctaaactcataaaactataaaagtaagtacagtcta 433  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  594962 aaatggttgcgaaaggttcatcatgaagaccttcacaagggaagaatcgtacctaaagattcagctaaactcataaaactataaaagtaattacagtcta 594863  T
Q  434 catacacacgagcaatcctgattgaattgtgagtagcacctatnnnnnnnnnnnnnntgatcaacatcattataaaatgttactttccttcccggaaaag 533  Q
    |||||||||||||||||||||||||||||||||||||||| ||              |||||||||||||||||||||||||||||||||||||||||||    
T  594862 catacacacgagcaatcctgattgaattgtgagtagcaccaataaaaaaaagaaaaatgatcaacatcattataaaatgttactttccttcccggaaaag 594763  T
Q  534 caataatctaaaaattgaaacacaataattcagatctatgaccaatcccatttatttctctgccaattcgataaaatgtgcggacataataccctgcatc 633  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  594762 caataatctaaaaattgaaacacaataattcagatctatgaccaatcccatttatttctctgccaattcgataaaatgtgcggacataataccctgcatc 594663  T
Q  634 atagcagaacaacctgaaaactagacttcaagtaagctactagacttgtctcttctatggcattggcaacatcaaacttggtgctttttctcattaacat 733  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  594662 atagcagaacaacctgaaaactagacttcaagtaagctactagacttgtctcttctatggcagtggcaacatcaaacttggtgctttttctcattaacat 594563  T
Q  734 aaacttatcacattcctgcagtacgaatttcaaaatcgatcaacgaaataatacaacaatcacgacttcaattgtaatt 812  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  594562 aaacttatcacattcctgcagtacgaatttcaaaatcgatcaacgaaataatacaacaatcacgacttcaattgtaatt 594484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 496 - 571
Target Start/End: Original strand, 26946561 - 26946636
Alignment:
Q  496 aacatcattataaaatgttactttccttcccggaaaagcaataatctaaaaattgaaacacaataattcagatcta 571  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  26946561 aacatcattataaaatgttactttccttcccggaaaagcaataatctaaaaaatgaaacacaataattcagatcta 26946636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 5e-49; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 157 - 375
Target Start/End: Original strand, 28168753 - 28168972
Alignment:
Q  157 atgaactttggaaaatattcttgctttactctcatttcagaaaacatagcccatatacatgaatcctagaatgcaaatccttaaagaacaataagaaaaa 256  Q
    |||||||||||||||| ||||||||| | |||||||||  ||||||||| |||||||| ||||||| |||||||||||||||||||| ||||||||||||    
T  28168753 atgaactttggaaaatgttcttgcttcagtctcatttccaaaaacatagtccatatacctgaatcccagaatgcaaatccttaaagatcaataagaaaaa 28168852  T
Q  257 tattattcatttgca-tcgacagtttaagattcttacggcaaagctttcttatgcggatccttaaagaacccacaaataaatggttgcgaaaggttcatc 355  Q
     || ||| ||||  | |  |||||||| ||||||||||||| ||||||||  || |||||||| |||||| | || |||||||||   ||||||||||||    
T  28168853 aataatttatttcaatttaacagtttaggattcttacggcagagctttctcctgtggatccttgaagaactcgcagataaatggtgcagaaaggttcatc 28168952  T
Q  356 atgaagaccttcacaaggga 375  Q
    ||||||||||||||||||||    
T  28168953 atgaagaccttcacaaggga 28168972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 507 - 571
Target Start/End: Original strand, 28169915 - 28169979
Alignment:
Q  507 aaaatgttactttccttcccggaaaagcaataatctaaaaattgaaacacaataattcagatcta 571  Q
    |||||||||||||||||||||||||  |||||||||| ||||| |||||||| ||||||||||||    
T  28169915 aaaatgttactttccttcccggaaacacaataatctataaattaaaacacaacaattcagatcta 28169979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 327 - 375
Target Start/End: Original strand, 27925051 - 27925099
Alignment:
Q  327 cacaaataaatggttgcgaaaggttcatcatgaagaccttcacaaggga 375  Q
    |||| |||||||||   ||||||||||||||||||||||||||||||||    
T  27925051 cacagataaatggtgcagaaaggttcatcatgaagaccttcacaaggga 27925099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 496 - 560
Target Start/End: Complemental strand, 1755186 - 1755122
Alignment:
Q  496 aacatcattataaaatgttactttccttcccggaaaagcaataatctaaaaattgaaacacaata 560  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  1755186 aacatcattataaaatgttactttccttcccggaatagcaataatctaaaaaatgaaacacaata 1755122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 691 - 804
Target Start/End: Complemental strand, 37550835 - 37550722
Alignment:
Q  691 tggcattggcaacatcaaacttggtgctttttctcattaacataaacttatcacattcctgcagtacgaatttcaaaatcgatcaacgaaataatacaac 790  Q
    ||||| ||||| |||||||||| ||||||||||||| | |||||||||| |||| | ||||||| | ||||||| ||||| |||||| ||  ||||||||    
T  37550835 tggcagtggcatcatcaaacttagtgctttttctcaatgacataaacttctcacgtgcctgcagcatgaatttcgaaatcaatcaacaaataaatacaac 37550736  T
Q  791 aatcacgacttcaa 804  Q
    ||||||||||||||    
T  37550735 aatcacgacttcaa 37550722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 691 - 804
Target Start/End: Complemental strand, 37653664 - 37653551
Alignment:
Q  691 tggcattggcaacatcaaacttggtgctttttctcattaacataaacttatcacattcctgcagtacgaatttcaaaatcgatcaacgaaataatacaac 790  Q
    ||||| ||||| |||||||||| ||||||||||||| | |||||||||| |||| | ||||||| | ||||||| ||||| |||||| ||  ||||||||    
T  37653664 tggcagtggcatcatcaaacttagtgctttttctcaatgacataaacttctcacgtgcctgcagcatgaatttcgaaatcaatcaacaaataaatacaac 37653565  T
Q  791 aatcacgacttcaa 804  Q
    ||||||||||||||    
T  37653564 aatcacgacttcaa 37653551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 157 - 375
Target Start/End: Complemental strand, 22476977 - 22476755
Alignment:
Q  157 atgaactttggaaaatattcttgctttactctcatttcagaaaacatagcccatatacatgaatcctagaatgcaaatccttaaagaacaataagaaaaa 256  Q
    ||||||||| |||||| | | ||||| | |||||||||  || |||||| |||||||| ||||||| |||||||||| ||||||||| ||||||||||||    
T  22476977 atgaactttcgaaaatgtccgtgcttcagtctcatttccaaatacatagtccatatacctgaatcccagaatgcaaacccttaaagatcaataagaaaaa 22476878  T
Q  257 tat---tattcatttgca-tcgacagtttaagattcttacggcaaagctttcttatgcggatccttaaagaacccacaaataaatggttgcgaaaggttc 352  Q
     ||   |||| ||||  | | ||| ||  | ||||||||||| | ||||||||  || |||||||| |||||| |||| ||||| |||   |||||||||    
T  22476877 cataaatatttatttaaatttgacggtgaaggattcttacggaagagctttctcctgtggatccttgaagaactcacagataaagggtgcagaaaggttc 22476778  T
Q  353 atcatgaagaccttcacaaggga 375  Q
    |||||||| |||| | |||||||    
T  22476777 atcatgaaaacctgcgcaaggga 22476755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 514 - 563
Target Start/End: Complemental strand, 22475861 - 22475812
Alignment:
Q  514 tactttccttcccggaaaagcaataatctaaaaattgaaacacaataatt 563  Q
    ||||||||||||||||||  |||||||||||||||  |||||||| ||||    
T  22475861 tactttccttcccggaaacacaataatctaaaaatgaaaacacaagaatt 22475812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 668 - 804
Target Start/End: Complemental strand, 39925946 - 39925810
Alignment:
Q  668 agctactagacttgtctcttctatggcattggcaacatcaaacttggtgctttttctcattaacataaacttatcacattcctgcagtacgaatttcaaa 767  Q
    |||||||||||||  ||||| ||||| | ||||| |||||||||||||| ||||||||| | |||||||||| | |  |  |||||  | | ||||||||    
T  39925946 agctactagacttccctcttttatggaagtggcatcatcaaacttggtgttttttctcaatgacataaacttcttaggtgtctgcaacatggatttcaaa 39925847  T
Q  768 atcgatcaacgaaataatacaacaatcacgacttcaa 804  Q
    ||| |||||||||  ||||||||||||| ||||||||    
T  39925846 atcaatcaacgaacaaatacaacaatcatgacttcaa 39925810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 703 - 779
Target Start/End: Original strand, 39915631 - 39915707
Alignment:
Q  703 catcaaacttggtgctttttctcattaacataaacttatcacattcctgcagtacgaatttcaaaatcgatcaacga 779  Q
    |||||||||| ||||||||||||| | | |||||||| |||| | ||||||  | ||||||||||||| ||||||||    
T  39915631 catcaaacttagtgctttttctcaatgaaataaacttctcacgtgcctgcaacatgaatttcaaaatcaatcaacga 39915707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 683 - 744
Target Start/End: Complemental strand, 45085115 - 45085054
Alignment:
Q  683 ctcttctatggcattggcaacatcaaacttggtgctttttctcattaacataaacttatcac 744  Q
    |||||||||| ||  ||||||||||||||||||||||||||||| | |||||||||| ||||    
T  45085115 ctcttctatgacagcggcaacatcaaacttggtgctttttctcaatgacataaacttctcac 45085054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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