View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13869_low_11 (Length: 567)
Name: NF13869_low_11
Description: NF13869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13869_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 532; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 6 - 549
Target Start/End: Original strand, 35429286 - 35429829
Alignment:
| Q |
6 |
ataatgaacaaacacacatggatgatgttgttctaaacaatctcttcgtgttcagcatcttccgtgatatgtctaacggcatattagacaaacttctgtc |
105 |
Q |
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| T |
35429286 |
ataatgaacaaacacacatggatgatgttgttctaaacaatctcttcgtgttcagcatcttccgtgatatgtctaacggcatattagacaaacttctgtc |
35429385 |
T |
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| Q |
106 |
tggcattaaagaatgtgctagaaatatggttgcactcaacatcgaagaatgtggaacgttggagatgaatgtgctgctccgtagagttaccacactcgag |
205 |
Q |
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| T |
35429386 |
tggcattaaagaatgtgctagaaatatggttgcactcaacatcgaagaatgtggaacgttggagatgaatgtgctgctccgtagagttaccacactcgag |
35429485 |
T |
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| Q |
206 |
gttgaagaagatggattagatcaatactatcaatgttctatttctcaacaaaatgtgggtttgtcattgaaatcagttgatgaaactatttcaaattcca |
305 |
Q |
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| T |
35429486 |
gttgaagaagatggattagatcaatactatcaatgttctatttctcaacaaaatgttggtttgtcattgaaatcggttgatgaaactatttcaaattcca |
35429585 |
T |
|
| Q |
306 |
acgataaatgttcaatttgtttggaggagttgcacaacgaatcgcagtcaaaactctttcatacaaaatgctctcatgtttttcataaagagtgtattgc |
405 |
Q |
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| T |
35429586 |
acgataaatgttcaatttgtttggaggagttgcacaacgaatcgcagtcaaaactctttcatacaaaatgctctcatgtttttcataaagagtgtattgc |
35429685 |
T |
|
| Q |
406 |
ccagttgatctatggatgcatcaatcgttcgactccgtattcttgtccaatgtgtcgacaagagataatgtgagtagagaagggacaatatgcatgcatt |
505 |
Q |
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| T |
35429686 |
ccagttgatctatggatgcatcaatcgttcgactccgtattcttgtccaatgtgtcgacaagagataatgtgagtagagaagggacaatatgcatgcatt |
35429785 |
T |
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| Q |
506 |
aattgaagtcccttgttcattgtttcaggtttattgggtctcta |
549 |
Q |
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| T |
35429786 |
aattgaagtcccttgttcattgtttcaggtgtattgggtctcta |
35429829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 6 - 549
Target Start/End: Original strand, 35420147 - 35420690
Alignment:
| Q |
6 |
ataatgaacaaacacacatggatgatgttgttctaaacaatctcttcgtgttcagcatcttccgtgatatgtctaacggcatattagacaaacttctgtc |
105 |
Q |
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| T |
35420147 |
ataatgaacaaacatacatggatgttattgttctaaacactctcttcttgttcagcatccttagtgatgtgcctcaaggcatattagacaaacttttgtc |
35420246 |
T |
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| Q |
106 |
tggcattaaagaatgtgctagaaatatggttgcactcaacatcgaagaatgtggaacgttggagatgaatgtgctgctccgtagagttaccacactcgag |
205 |
Q |
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| T |
35420247 |
tgacattaaagattgtgctagaaatatggctgcactcaacatcgaagaatctggaacattggagatgaatgtgctgctccttagagttactacactcgtt |
35420346 |
T |
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| Q |
206 |
gttgaagaagatggattagatcaatactatcaatgttctatttctcaacaaaatgtgggtttgtcattgaaatcagttgatgaaactatttcaaattcca |
305 |
Q |
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| T |
35420347 |
gttgaagaagatggattagatcaatactatcaaagttctatttatcaacaaaatgtgggtttgtcatcgaaatcggatgttgaaactctttcaaattcca |
35420446 |
T |
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| Q |
306 |
acgataaatgttcaatttgtttggaggagttgcacaacgaatcgcagtcaaaactctttcatacaaaatgctctcatgtttttcataaagagtgtattgc |
405 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
35420447 |
ccgatgaatgttcaatttgtttggaggagttgcacaacgaatcgcagtcagaactctttcatacaaaatgctctcatatttttcataaagagtgtattgc |
35420546 |
T |
|
| Q |
406 |
ccagttgatctatggatgcatcaatcgttcgactccgtattcttgtccaatgtgtcgacaagagataatgtgagtagagaagggacaatatgcatgcatt |
505 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35420547 |
ccagttgatctatggatgcatcaatcgttcaactccgtattcttgtccaatgtgtcgacaagagataatgtgagtagagaagggacaatatgcatgcatt |
35420646 |
T |
|
| Q |
506 |
aattgaagtcccttgttcattgtttcaggtttattgggtctcta |
549 |
Q |
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| T |
35420647 |
aattgaagtcccttgttcattgtttcaggtgtattgggtctcta |
35420690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 359 - 464
Target Start/End: Original strand, 35423499 - 35423604
Alignment:
| Q |
359 |
ctctttcatacaaaatgctctcatgtttttcataaagagtgtattgcccagttgatctatggatgcatcaatcgttcgactccgtattcttgtccaatgt |
458 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||| | ||| ||| || |||||||| |||| || || | |||||||| ||| ||| |
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| T |
35423499 |
ctctttcatacaaaatgctctcatgtttttcatgaagagtgtattagcaagtggattgatcgatgcatcgatcgctcatcttcttattcttgcccattgt |
35423598 |
T |
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| Q |
459 |
gtcgac |
464 |
Q |
| |
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|||||| |
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| T |
35423599 |
gtcgac |
35423604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 308 - 404
Target Start/End: Original strand, 42974029 - 42974125
Alignment:
| Q |
308 |
gataaatgttcaatttgtttggaggagttgcacaacgaatcgcagtcaaaactctttcatacaaaatgctctcatgtttttcataaagagtgtattg |
404 |
Q |
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||||||||||| ||||||||||||||||| || | |||||| ||| |||||| ||| |||||| || |||||||| |||||||||||||||| |
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| T |
42974029 |
gataaatgttcgatttgtttggaggagttttgtaaaggatcgcattcagaactctactatagaaaatgttcgcatgttttccataaagagtgtattg |
42974125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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