View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13869_low_12 (Length: 567)
Name: NF13869_low_12
Description: NF13869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13869_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-172; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 195 - 537
Target Start/End: Complemental strand, 5039728 - 5039381
Alignment:
| Q |
195 |
ttatcatcaattgattatgagaaactaatgaaaataatggaaataggcgacgataccttttagcatgcaaaaaggtctaacaatttaaactccctattat |
294 |
Q |
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| T |
5039728 |
ttatcatcaattgattatgagaaagtaatgaaaataatggaaataggtgacgataccttttagcatgcaaaaaggtctaacaatttaaactccctattat |
5039629 |
T |
|
| Q |
295 |
aaagggctagaaagtgattgttactttaattaaaagtatggtaatttaagttgtatttttcttggagaaccttaacaaagatttttaattaat----taa |
390 |
Q |
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| T |
5039628 |
aaagggctagaaagtgattgttactttaattaaaagtatggtaatttaagttgtatttttcttggagaaccttaacaaagatttttaattaattaattaa |
5039529 |
T |
|
| Q |
391 |
tgtgctttagttagctaaccaatgcaaaagacattctcttaagattagtgagcagagtcagt-ggtcctgtctccttaattcaacccaaagcgtgctctt |
489 |
Q |
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| T |
5039528 |
tgtgctttagttagctaaccaatgcaaaagacattctcttaagattagtgagcagagtcagtgggtcctgtctccttaattcaacccaaagcgtgctctt |
5039429 |
T |
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| Q |
490 |
aaaaatcactccaaaacgcattgttaggaacgtgcttgtttattcttc |
537 |
Q |
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| T |
5039428 |
aaaaatcactccaaaacgcattgttaggaacgtgcttgcgtattcttc |
5039381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 5039950 - 5039746
Alignment:
| Q |
17 |
tgtgtttggttattcaacagtaaaaattaatttttgataaacatctcaaattagggaatgtggnnnnnnnnnn-cttttcatactaaattaagtcttaca |
115 |
Q |
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| T |
5039950 |
tgtgtttggttattcaccagtaaaaattaatttttgataaacatctcaaattagggaatgtggtttttttttttcttttcatactaaattaagtcttaca |
5039851 |
T |
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| Q |
116 |
tcatctttcaaagtaaaattatctaaa-atctcaaattcaattataatataatctttctttgagcaaattcaaatgtctattatcatcaattgattatga |
214 |
Q |
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| T |
5039850 |
tcatctttcaaagtaaaattatctaaacatctcaaattcaattataatataatctttctttgaggaaattcaaatgtctattatcatcaattgattatga |
5039751 |
T |
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| Q |
215 |
gaaac |
219 |
Q |
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||||| |
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| T |
5039750 |
gaaac |
5039746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 400 - 496
Target Start/End: Complemental strand, 43186167 - 43186078
Alignment:
| Q |
400 |
gttagctaaccaatgcaaaagacattctcttaagattagtgagcagagtcagtggtcctgtctccttaattcaacccaaagcgtgctcttaaaaatc |
496 |
Q |
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||||||||| |||||||||| ||||||||||| || ||||| ||||||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
43186167 |
gttagctaaacaatgcaaaatacattctcttatgactagtg-------tcagtggtcctgtctccttgattcaacccaaagcgtgctcttgaaaatc |
43186078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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