View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13869_low_13 (Length: 555)
Name: NF13869_low_13
Description: NF13869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13869_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 48230496 - 48230150
Alignment:
| Q |
1 |
tacatgaataattttaccaaaaatgtcattgccatgtaatatacatgtgattgaacaaagtgtagcatatcttgattaaactagtacataagcaaattat |
100 |
Q |
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| T |
48230496 |
tacatgaataattttaccaaaaatgtcattgccatgtaatatacatgtgattgaacaaagtgtagcatatcttgattaaactagtacataagcaaattat |
48230397 |
T |
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| Q |
101 |
acatgnnnnnnnnnnnnnnttgaaaatggatacaaaacaagaaaagtacctggtgagagggaggatgctcatggtgatgggagtgaaattcccagagttt |
200 |
Q |
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| T |
48230396 |
acatgaaaaaataaaaaaattgaaaatggatacaaaacaagaaaagtacctggtgagagggaggatgctcatggtggtgggagtgaaattcccagagttt |
48230297 |
T |
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| Q |
201 |
agcacagagatttcttgcagagagtgtttttgaagtgggaaagttgaggaactgttgttgttgggaagaaggaaagtcaacaagtctccaagtgggtggt |
300 |
Q |
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| T |
48230296 |
agcacagagatttcttgcagagagtgtttttgaagtgggaaagttgaggaactgttgttgttgggaagaaggaaagtcaacaagtctccaagtgggtggt |
48230197 |
T |
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| Q |
301 |
ggtgttgaacttgaagaccttcctcttcctcctctcttctccacaag |
347 |
Q |
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| T |
48230196 |
ggtgttgaacttgaagaccttcctcttcctcctctcttctccacaag |
48230150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 442 - 547
Target Start/End: Complemental strand, 48230055 - 48229950
Alignment:
| Q |
442 |
aaaaaacattcaaagtgttttgtgtttgaaagttgagagtaccgtgtgtcatgaagtagaaagaatattaacctgttaagtaagttacaaactcagcttt |
541 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48230055 |
aaaaaacattcaaagtgttttgtgtttgaaagttgagagtgccgtgtgtcatgaagtagaaagaatattaacctgttaagtaagttacaaactcagcttt |
48229956 |
T |
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| Q |
542 |
cttctc |
547 |
Q |
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|||||| |
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| T |
48229955 |
cttctc |
48229950 |
T |
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