View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13869_low_17 (Length: 485)

Name: NF13869_low_17
Description: NF13869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13869_low_17
NF13869_low_17
[»] chr2 (3 HSPs)
chr2 (198-466)||(36551844-36552112)
chr2 (8-201)||(36552133-36552330)
chr2 (31-104)||(13059505-13059578)
[»] chr6 (5 HSPs)
chr6 (8-104)||(3550665-3550766)
chr6 (8-105)||(13649468-13649570)
chr6 (9-105)||(18587934-18588035)
chr6 (43-101)||(8809795-8809853)
chr6 (43-104)||(7082512-7082573)
[»] chr8 (4 HSPs)
chr8 (8-105)||(37322141-37322243)
chr8 (11-104)||(25890643-25890741)
chr8 (31-104)||(136499-136572)
chr8 (31-103)||(18309404-18309476)
[»] chr5 (1 HSPs)
chr5 (31-105)||(32239358-32239432)
[»] chr3 (2 HSPs)
chr3 (9-105)||(26535622-26535723)
chr3 (9-105)||(14853490-14853591)
[»] chr1 (1 HSPs)
chr1 (43-98)||(25388377-25388432)
[»] chr7 (3 HSPs)
chr7 (58-104)||(17507405-17507451)
chr7 (58-104)||(17545763-17545809)
chr7 (9-105)||(15644796-15644897)


Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 198 - 466
Target Start/End: Complemental strand, 36552112 - 36551844
Alignment:
Q  198 atttacaaataaatatccattttcttccactagaacatcaatgaaagctcaaacacgaaaccttcatatcgttttttaccattagataaacttttgaagt 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  36552112 atttacaaataaatatccattttcttccactagaacatcaatgaaagctcaaacacggaaccttcatatcgttttttaccattagataaacttttgaagt 36552013  T
Q  298 tatacataattacatacacttatttttcacattatttttaaccacgtttatattctgttatctctccctacctaacgaggccaataatctagtatacaaa 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  36552012 tatacataattacatacacttatttttcacattatttttaaccacgtttatattctgttatctctccctacctaacgaggccaataatctagtatccaaa 36551913  T
Q  398 atgaggtcaatatttaacgacaagaatagaccaatattaattaaacaatgcatttgtgcacatgcccac 466  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36551912 atgaggtcaatatttaacgacaagaatagaccaatattaattaaacaatgcatttgtgcacatgcccac 36551844  T

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Target: chr2; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 8 - 201
Target Start/End: Complemental strand, 36552330 - 36552133
Alignment:
Q  8 atattattctttgtgatggttgaaa-----aaagactagttttgtatttggaaaacatatgtggtggccgagtcctctgtcgtgtttagacattggatag 102  Q
    |||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  36552330 atattattctttgtgatggttgaaagccaaaaagactagttttgtatttggaaaacatatgtggtggtcgagtcctctgtcgtgtttagacattggatag 36552231  T
Q  103 actaattctatacattgtgtaaactgcttcttttcagtagtttcttcgatatatcttatgctaaggagaccacttttgctgtgttagtatcatcaattt 201  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||  ||||||| |||||||||||||| |||||| |||||||||||||||||||    
T  36552230 actaattctatacattgtttgaactgcttcttttcagtagtttcttcggcatatcttgtgctaaggagacca-ttttgcagtgttagtatcatcaattt 36552133  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 31 - 104
Target Start/End: Complemental strand, 13059578 - 13059505
Alignment:
Q  31 aaaaagactagttttgtatttggaaaacatatgtggtggccgagtcctctgtcgtgtttagacattggatagac 104  Q
    |||||| || ||||||| |||||  | |||||||||||| | |||||| |||||||||||| ||||||||||||    
T  13059578 aaaaaggcttgttttgtttttggtgaccatatgtggtggtctagtcctatgtcgtgtttaggcattggatagac 13059505  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 3550766 - 3550665
Alignment:
Q  8 atattattctttgtgatggttgaaa-----aaagactagttttgtatttggaaaacatatgtggtggccgagtcctctgtcgtgtttagacattggatag 102  Q
    ||||||||||||||| |||||||||     |||| |||| |||||||||||  ||||| |||||||| |||||| | |||||||||||||||||| ||||    
T  3550766 atattattctttgtggtggttgaaagccaaaaaggctagctttgtatttggtgaacatttgtggtggtcgagtcttttgtcgtgtttagacattgaatag 3550667  T
Q  103 ac 104  Q
    ||    
T  3550666 ac 3550665  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 13649468 - 13649570
Alignment:
Q  8 atattattctttgtgatggttgaaa-----aaagactagttttgtatttggaaaacatatgtggtggccgagtcctctgtcgtgtttagacattggatag 102  Q
    ||||||||||||||| |||||||||     |||| || |||||| ||||||  | |||||||||||| |||||||| |||||||||||| | ||||||||    
T  13649468 atattattctttgtggtggttgaaagccaaaaaggcttgttttgcatttggtgatcatatgtggtggtcgagtcctatgtcgtgtttaggcgttggatag 13649567  T
Q  103 act 105  Q
    |||    
T  13649568 act 13649570  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 9 - 105
Target Start/End: Complemental strand, 18588035 - 18587934
Alignment:
Q  9 tattattctttgtgatggttgaaa-----aaagactagttttgtatttggaaaacatatgtggtggccgagtcctctgtcgtgtttagacattggataga 103  Q
    |||||||||||||| |||||||||     |||| || |||||||||||||  | |||||||||||| | |||||| |||||||||||| | |||| ||||    
T  18588035 tattattctttgtggtggttgaaatccaaaaaggcttgttttgtatttggtgatcatatgtggtggtctagtcctatgtcgtgtttaggcgttggctaga 18587936  T
Q  104 ct 105  Q
    ||    
T  18587935 ct 18587934  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 101
Target Start/End: Original strand, 8809795 - 8809853
Alignment:
Q  43 tttgtatttggaaaacatatgtggtggccgagtcctctgtcgtgtttagacattggata 101  Q
    |||||||||||  ||||| |||||||| |||||||| |||| |||||| ||||||||||    
T  8809795 tttgtatttggtgaacatttgtggtggtcgagtcctttgtcatgtttacacattggata 8809853  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 104
Target Start/End: Complemental strand, 7082573 - 7082512
Alignment:
Q  43 tttgtatttggaaaacatatgtggtggccgagtcctctgtcgtgtttagacattggatagac 104  Q
    |||||||||||  ||||| |||||||| ||||| || ||||||||||| ||||| |||||||    
T  7082573 tttgtatttggtgaacatttgtggtggtcgagtactttgtcgtgtttacacatttgatagac 7082512  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 37322243 - 37322141
Alignment:
Q  8 atattattctttgtgatggttgaaa-----aaagactagttttgtatttggaaaacatatgtggtggccgagtcctctgtcgtgtttagacattggatag 102  Q
    ||||||||||||||| |||||||||     |||| || |||||||||||||  | |||||||||||| | |||||| |||||||||||| | ||||||||    
T  37322243 atattattctttgtggtggttgaaagtcaaaaaggcttgttttgtatttggtgatcatatgtggtggtctagtcctatgtcgtgtttaggcgttggatag 37322144  T
Q  103 act 105  Q
    |||    
T  37322143 act 37322141  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 25890741 - 25890643
Alignment:
Q  11 ttattctttgtgatggttgaaa-----aaagactagttttgtatttggaaaacatatgtggtggccgagtcctctgtcgtgtttagacattggatagac 104  Q
    |||||||||||| |||||||||     |||| || ||||||| |||||  | |||||||||||| | |||||| |||||||||||| ||||||||||||    
T  25890741 ttattctttgtggtggttgaaagccaaaaaggcttgttttgtttttggtgatcatatgtggtggtccagtcctatgtcgtgtttaggcattggatagac 25890643  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 31 - 104
Target Start/End: Complemental strand, 136572 - 136499
Alignment:
Q  31 aaaaagactagttttgtatttggaaaacatatgtggtggccgagtcctctgtcgtgtttagacattggatagac 104  Q
    |||||| || ||||||| |||||  | |||||||||||| | |||||| |||||||||||| ||||||||||||    
T  136572 aaaaaggcttgttttgtttttggtgaccatatgtggtggtctagtcctatgtcgtgtttaggcattggatagac 136499  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 103
Target Start/End: Original strand, 18309404 - 18309476
Alignment:
Q  31 aaaaagactagttttgtatttggaaaacatatgtggtggccgagtcctctgtcgtgtttagacattggataga 103  Q
    |||||| || ||||||| |||||  | |||||||||||| | |||||| |||||||||||| |||||||||||    
T  18309404 aaaaaggcttgttttgtttttggtgaccatatgtggtggtctagtcctatgtcgtgtttaggcattggataga 18309476  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 105
Target Start/End: Complemental strand, 32239432 - 32239358
Alignment:
Q  31 aaaaagactagttttgtatttggaaaacatatgtggtggccgagtcctctgtcgtgtttagacattggatagact 105  Q
    |||||| || |||||||||||||  | |||||||||||| | |||||| |||||||||||| | |||||||||||    
T  32239432 aaaaaggcttgttttgtatttggtgatcatatgtggtggtctagtcctatgtcgtgtttaggcgttggatagact 32239358  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 9 - 105
Target Start/End: Complemental strand, 26535723 - 26535622
Alignment:
Q  9 tattattctttgtgatggttgaaa-----aaagactagttttgtatttggaaaacatatgtggtggccgagtcctctgtcgtgtttagacattggataga 103  Q
    |||||||||||||| |||||||||     |||| || |||||||||||||  | |||||||||| | | |||||| |||||||||||| |||| ||||||    
T  26535723 tattattctttgtggtggttgaaagccaaaaaggcttgttttgtatttggtgatcatatgtggtagtctagtcctatgtcgtgtttaggcatttgataga 26535624  T
Q  104 ct 105  Q
    ||    
T  26535623 ct 26535622  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 105
Target Start/End: Complemental strand, 14853591 - 14853490
Alignment:
Q  9 tattattctttgtgatggttgaaa-----aaagactagttttgtatttggaaaacatatgtggtggccgagtcctctgtcgtgtttagacattggataga 103  Q
    |||||||||||||| |||||||||     |||| || |||||||||||||  | |||||||||||| | ||||||  ||||||||||  | |||||||||    
T  14853591 tattattctttgtggtggttgaaagccaaaaaggcttgttttgtatttggtgatcatatgtggtggtctagtcctacgtcgtgtttaagcgttggataga 14853492  T
Q  104 ct 105  Q
    ||    
T  14853491 ct 14853490  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 98
Target Start/End: Complemental strand, 25388432 - 25388377
Alignment:
Q  43 tttgtatttggaaaacatatgtggtggccgagtcctctgtcgtgtttagacattgg 98  Q
    |||||||||||  || || |||||||| |||||||| |||||||||||||||||||    
T  25388432 tttgtatttggtgaatatttgtggtggtcgagtcctttgtcgtgtttagacattgg 25388377  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 104
Target Start/End: Original strand, 17507405 - 17507451
Alignment:
Q  58 catatgtggtggccgagtcctctgtcgtgtttagacattggatagac 104  Q
    |||||||||||| | |||||| |||||||||||| ||||||||||||    
T  17507405 catatgtggtggtctagtcctatgtcgtgtttaggcattggatagac 17507451  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 104
Target Start/End: Complemental strand, 17545809 - 17545763
Alignment:
Q  58 catatgtggtggccgagtcctctgtcgtgtttagacattggatagac 104  Q
    |||||||||||| | |||||| |||||||||||| ||||||||||||    
T  17545809 catatgtggtggtctagtcctatgtcgtgtttaggcattggatagac 17545763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 105
Target Start/End: Complemental strand, 15644897 - 15644796
Alignment:
Q  9 tattattctttgtgatggttgaaa-----aaagactagttttgtatttggaaaacatatgtggtggccgagtcctctgtcgtgtttagacattggataga 103  Q
    |||||||||||||| |||||||||     |||  || ||||||||||||   | |||||||||||| | |||||| |||||||||||| | |||||||||    
T  15644897 tattattctttgtggtggttgaaacccaaaaatgcttgttttgtatttgatgatcatatgtggtggtctagtcctatgtcgtgtttaggcgttggataga 15644798  T
Q  104 ct 105  Q
    ||    
T  15644797 ct 15644796  T

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