View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13869_low_18 (Length: 478)
Name: NF13869_low_18
Description: NF13869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13869_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 15 - 346
Target Start/End: Original strand, 36068192 - 36068523
Alignment:
| Q |
15 |
tatttcatatgtataatgtaaatattaccgtagattttctcatcaactaatattaaattgatttcttcaacattttgaccatttcatttgatcaactatt |
114 |
Q |
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| T |
36068192 |
tatttcatatgtataatgtaaatattgccgtagattttctcatcaactaatattaaattggtttgttcaacattttgaccatttcatttgatcaactatt |
36068291 |
T |
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| Q |
115 |
gttacattttctcattagaacaaaattttcataaaactacccatatttgcagtaataaataaggaactctagcattaataataaattacataccaaagca |
214 |
Q |
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| T |
36068292 |
gttacattttctcattagaacaaaattttcataaaattacccatatttgcagtaataaataaggaaatctagcattaataataaattacataccaaagca |
36068391 |
T |
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| Q |
215 |
aatagggcactcaatctcatacatgcttgacaaatctatgctcgcatacctgaaaataaaccaatagaggaatccacaaacgttagaatgttggatccgt |
314 |
Q |
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| T |
36068392 |
aatagggcactcaatctcatacatgcttgacaaatctatgctcgcatacctgaaaataaaccaataggggaatccacaaacgttagaatgttggatccgt |
36068491 |
T |
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| Q |
315 |
tacattataaaaattctagaattgtttcaaaa |
346 |
Q |
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| T |
36068492 |
tacattataaaaaatttagaattgtttcaaaa |
36068523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 33 - 305
Target Start/End: Complemental strand, 27593625 - 27593340
Alignment:
| Q |
33 |
taaatattaccgtagattttctcatcaactaatattaaattgatttcttcaacattttgaccatttcatttga------tcaactattgttacattttct |
126 |
Q |
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| T |
27593625 |
taaatattaccatagattttctcattaactaatattaaattggtttgttcaacattttgaccatttcatttgaatttaatcaactattgttatattatct |
27593526 |
T |
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| Q |
127 |
cattagaacaaaattttca-taaaactacccatatttgcagtaataaataaggaactctagcattaataataaattacataccaaagcaaatagggcact |
225 |
Q |
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| T |
27593525 |
cattagaacaaaatttacagtaaaatttattatatttgcagtaataaataaggaaatctagcattaattataaattacataccaaggcaaatagggcact |
27593426 |
T |
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| Q |
226 |
caatctcataca----tgcttgacaaatctatgctcgcatacctgaaaataaac--caatagaggaatccacaaacgttagaatgt |
305 |
Q |
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| T |
27593425 |
caatctcatgtatgtttgtttgacaaatctatgctcacatatttgtaaataaacatcaatagaggaatccaaaaatattagaatgt |
27593340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 17 - 144
Target Start/End: Original strand, 35145415 - 35145542
Alignment:
| Q |
17 |
tttcatatgtataatgtaaatattaccgtagattttctcatcaactaatattaaattgatttcttcaacattttgaccatttcatttgatcaactattgt |
116 |
Q |
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| T |
35145415 |
tttcatatatataatctaaatattactgtagattcccttattaactaatattaaattggtttgttcatcattttgaccaatttatttgatcaagtattgt |
35145514 |
T |
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| Q |
117 |
tacattttctcattagaacaaaattttc |
144 |
Q |
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| T |
35145515 |
tatattttgtcattagaacaaaattttc |
35145542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 391 - 463
Target Start/End: Original strand, 36068574 - 36068650
Alignment:
| Q |
391 |
tgaaatgaaaataaaaataaatcggaagtaacc----cttaatactttagagaggtgggtcacttaattgctgaatt |
463 |
Q |
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|||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
36068574 |
tgaaatgaaaataaaaataaattggaagtaaccatgccttaatattttagagaggtgggtcacttaattgctgaatt |
36068650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 148; Significance: 6e-78; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 16 - 310
Target Start/End: Original strand, 29026130 - 29026432
Alignment:
| Q |
16 |
atttcatatgtataatgtaaatattaccgtagattttctcatcaactaatattaaattgatttcttcaacattttgaccatttcatttgatcaactattg |
115 |
Q |
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||||||||| |||||| ||||||||||| ||||||||||||| |||| ||||||||||| ||| ||||||||||||||||||||||||||| | ||||| |
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| T |
29026130 |
atttcatatatataatctaaatattaccatagattttctcataaactgatattaaattggtttgttcaacattttgaccatttcatttgattatatattg |
29026229 |
T |
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| Q |
116 |
ttacattttctcattagaacaaaattttca-taaaactacccatatttgcagtaataaataaggaactctagcattaataataaattacataccaaagca |
214 |
Q |
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||||||| ||| || |||||||| |||| | ||||| ||||||||||| |||||||||||||| || |||||| ||||| |||||||||||||||||||| |
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| T |
29026230 |
ttacattctcttatgagaacaaattttttagtaaaattacccatatttacagtaataaataagaaaatctagccttaattataaattacataccaaagca |
29026329 |
T |
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| Q |
215 |
aatagggcactcaatctcatacatgcttgacaaatctatgctcgcatacctgaaaataa--accaat-----agaggaatccacaaacgttagaatgttg |
307 |
Q |
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|||||||||||||||||||| ||| ||||||||||||||||| |||| ||| ||| || |||||| ||||||||||||||| |||||||||||| |
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| T |
29026330 |
aatagggcactcaatctcatgtatgtttgacaaatctatgctcacatatctgcaaagaagcaccaatagaggagaggaatccacaaatgttagaatgttg |
29026429 |
T |
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| Q |
308 |
gat |
310 |
Q |
| |
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||| |
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| T |
29026430 |
gat |
29026432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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