View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13869_low_19 (Length: 464)
Name: NF13869_low_19
Description: NF13869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13869_low_19 |
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| [»] scaffold0334 (2 HSPs) |
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Alignment Details
Target: scaffold0334 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: scaffold0334
Description:
Target: scaffold0334; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 115 - 443
Target Start/End: Original strand, 16469 - 16825
Alignment:
| Q |
115 |
ctcaacccgattttattttgcagcacttaccaatccaaattccctttattttcaaagctgctgctacgtcccttttctttcttttatttaattaaattga |
214 |
Q |
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| T |
16469 |
ctcaacccgattttattttgcagcacttaccaatccaaattccctttattttcaaagttgctgctacgtcccttttctttcttttatttaattaaattga |
16568 |
T |
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| Q |
215 |
attgttgttg------------------cggggctgagcatataacaattgttattgctgagtacgtgtgccatataatccatatattttcgttgtttgc |
296 |
Q |
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| T |
16569 |
attgttgttgttggctgttccattgttgcgggactgagcatataacaattgttattgttgagtacgtgtgccatataatccatatattttcattgtttgc |
16668 |
T |
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| Q |
297 |
gctactgtttggtgtt-------cgatttcaattgcagttatgtttcttggagtattatgcccattgtcgtgacttgatt---ttaaagcatattggtag |
386 |
Q |
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| T |
16669 |
gctactgtttggtgtttggtgttcgattccaattgcagttatgtttcttggagtattatgcccattgtcgtgacttggttgttttaaagcatattggtag |
16768 |
T |
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| Q |
387 |
agttttcttcatagcagtggaaattgtactcaattaaagactccaactataacaggt |
443 |
Q |
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| T |
16769 |
agttttcttcatagcagtggaaattgtactcaattaaagactccaactataacaggt |
16825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0334; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 12 - 45
Target Start/End: Original strand, 16366 - 16399
Alignment:
| Q |
12 |
cagaacctgtgttctattttcgttcagcaatcca |
45 |
Q |
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| T |
16366 |
cagaacctgtgttctattttcgttcagcaatcca |
16399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 115 - 339
Target Start/End: Complemental strand, 11177497 - 11177266
Alignment:
| Q |
115 |
ctcaacccgattttattttgcagcacttaccaatccaaattccctttattttcaaagctgctgctacgtcccttttctttcttttatttaattaaattga |
214 |
Q |
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| T |
11177497 |
ctcaacccgattttattttgcagcacttaccaatccaaattccctttattttcaaagctgctgctacgtcccttttctttcttttatttaattaaattga |
11177398 |
T |
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| Q |
215 |
attgttgttgcggggctgagcatataacaattgttattgctgagtacgtgtgccatataatccatatattttcgttgtttgcgctactgtttgg------ |
308 |
Q |
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| T |
11177397 |
attgttgttgctgggctgagtatataacaattgttattgctgagtacgtgtgccatataatccatatattttcattgtttgcgctactgtttggtgtttg |
11177298 |
T |
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| Q |
309 |
-tgttcgatttcaattgcagttatgtttcttg |
339 |
Q |
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| T |
11177297 |
gtgttcgatttcaattgcagttatgtttcttg |
11177266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 12 - 45
Target Start/End: Complemental strand, 11177600 - 11177567
Alignment:
| Q |
12 |
cagaacctgtgttctattttcgttcagcaatcca |
45 |
Q |
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| T |
11177600 |
cagaacctgtgttctattttcgttcagcaatcca |
11177567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 443
Target Start/End: Complemental strand, 11177268 - 11177235
Alignment:
| Q |
410 |
ttgtactcaattaaagactccaactataacaggt |
443 |
Q |
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| T |
11177268 |
ttgtactcaattaaagactacaactataacaggt |
11177235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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